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whbo-base.obo
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format-version: 1.2
data-version: pcl/releases/2025-01-06/whbo-base.owl
idspace: custom http://n2o.neo/custom/
idspace: dce http://purl.org/dc/elements/1.1/
idspace: dcterms http://purl.org/dc/terms/
idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl#
idspace: skos http://www.w3.org/2004/02/skos/core#
ontology: pcl/whbo-base
property_value: dce:description "A data-driven cell-type ontology of the human brain" xsd:string
property_value: dce:type IAO:8000001
property_value: dcterms:license http://creativecommons.org/licenses/by/4.0/
property_value: dcterms:title "Whole Human Brain Ontology" xsd:string
property_value: owl:versionInfo "2025-01-06" xsd:string
[Term]
id: PCL:0051005
name: Mgl_4 microglial cell (Hsap)
def: "A microglial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SRGN (Hsap), HIF1A-AS3 (Hsap). The soma of these cells can be found in the spinal cord, pons, myelencephalon. The reference data for this cell type is CS202210140_5." [DOI:10.1126/science.add7046]
synonym: "Mgl_4" EXACT []
synonym: "SRGN (Hsap), HIF1A-AS3 (Hsap) expressing microglial cell of brain (Homo sapiens)" EXACT []
is_a: CL:0000129
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000122862 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000258667 ! expresses
relationship: RO:0015004 PCL:0052505 ! has characterizing marker set NS forest marker set of Mgl_4 Hsap (Human).
property_value: IAO:0000028 "Mgl_4 (Human)" xsd:string
property_value: PCL:0010058 "HIF1A-AS3 (Hsap)" xsd:string
property_value: PCL:0010058 "SRGN (Hsap)" xsd:string
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 26.0%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 13.2%."}
property_value: PCL:0010063 UBERON:0002240 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Spinal cord: 31.8%."}
property_value: skos:prefLabel "Mgl_4" xsd:string
[Term]
id: PCL:0051006
name: Mgl_5 microglial cell (Hsap)
def: "A microglial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of APBB1IP (Hsap), TTR (Hsap). The soma of these cells can be found in the hippocampal formation, myelencephalon, basal forebrain. The reference data for this cell type is CS202210140_6." [DOI:10.1126/science.add7046]
synonym: "APBB1IP (Hsap), TTR (Hsap) expressing microglial cell of brain (Homo sapiens)" EXACT []
synonym: "Mgl_5" EXACT []
is_a: CL:0000129
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000077420 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000118271 ! expresses
relationship: RO:0015004 PCL:0052506 ! has characterizing marker set NS forest marker set of Mgl_5 Hsap (Human).
property_value: IAO:0000028 "Mgl_5 (Human)" xsd:string
property_value: PCL:0010058 "APBB1IP (Hsap)" xsd:string
property_value: PCL:0010058 "TTR (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 40.4%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 20.1%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 29.6%."}
property_value: skos:prefLabel "Mgl_5" xsd:string
[Term]
id: PCL:0051007
name: Mgl_6 microglial cell (Hsap)
def: "A microglial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SCIN (Hsap), ITGAX (Hsap), LINC00278 (Hsap). The soma of these cells can be found in the hippocampal formation, basal forebrain, thalamus. The reference data for this cell type is CS202210140_7." [DOI:10.1126/science.add7046]
synonym: "Mgl_6" EXACT []
synonym: "SCIN (Hsap), ITGAX (Hsap), LINC00278 (Hsap) expressing microglial cell of brain (Homo sapiens)" EXACT []
is_a: CL:0000129
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000006747 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000140678 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000231535 ! expresses
relationship: RO:0015004 PCL:0052507 ! has characterizing marker set NS forest marker set of Mgl_6 Hsap (Human).
property_value: IAO:0000028 "Mgl_6 (Human)" xsd:string
property_value: PCL:0010058 "ITGAX (Hsap)" xsd:string
property_value: PCL:0010058 "LINC00278 (Hsap)" xsd:string
property_value: PCL:0010058 "SCIN (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 25.1%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 15.2%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 11.0%."}
property_value: skos:prefLabel "Mgl_6" xsd:string
[Term]
id: PCL:0051008
name: Mgl_7 microglial cell (Hsap)
def: "A microglial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of CX3CR1 (Hsap), OLR1 (Hsap), LINC02712 (Hsap). The soma of these cells can be found in the basal forebrain, mesencephalon, pons. The reference data for this cell type is CS202210140_8." [DOI:10.1126/science.add7046]
synonym: "CX3CR1 (Hsap), OLR1 (Hsap), LINC02712 (Hsap) expressing microglial cell of brain (Homo sapiens)" EXACT []
synonym: "Mgl_7" EXACT []
is_a: CL:0000129
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000168329 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000173391 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000273409 ! expresses
relationship: RO:0015004 PCL:0052508 ! has characterizing marker set NS forest marker set of Mgl_7 Hsap (Human).
property_value: IAO:0000028 "Mgl_7 (Human)" xsd:string
property_value: PCL:0010058 "CX3CR1 (Hsap)" xsd:string
property_value: PCL:0010058 "LINC02712 (Hsap)" xsd:string
property_value: PCL:0010058 "OLR1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 32.0%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 19.4%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 12.5%."}
property_value: skos:prefLabel "Mgl_7" xsd:string
[Term]
id: PCL:0051009
name: Mgl_8 microglial cell (Hsap)
def: "A microglial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of CX3CR1 (Hsap), CCDC26 (Hsap), LNCAROD (Hsap). The soma of these cells can be found in the hippocampal formation, mesencephalon, basal forebrain. The reference data for this cell type is CS202210140_9." [DOI:10.1126/science.add7046]
synonym: "CX3CR1 (Hsap), CCDC26 (Hsap), LNCAROD (Hsap) expressing microglial cell of brain (Homo sapiens)" EXACT []
synonym: "Mgl_8" EXACT []
is_a: CL:0000129
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000168329 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000229140 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000231131 ! expresses
relationship: RO:0015004 PCL:0052509 ! has characterizing marker set NS forest marker set of Mgl_8 Hsap (Human).
property_value: IAO:0000028 "Mgl_8 (Human)" xsd:string
property_value: PCL:0010058 "CCDC26 (Hsap)" xsd:string
property_value: PCL:0010058 "CX3CR1 (Hsap)" xsd:string
property_value: PCL:0010058 "LNCAROD (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 19.2%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 11.1%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 18.4%."}
property_value: skos:prefLabel "Mgl_8" xsd:string
[Term]
id: PCL:0051010
name: Mgl_9 microglial cell (Hsap)
def: "A microglial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of CX3CR1 (Hsap), AIF1 (Hsap), LINC02712 (Hsap). The soma of these cells can be found in the cerebral cortex, mesencephalon, hippocampal formation. The reference data for this cell type is CS202210140_10." [DOI:10.1126/science.add7046]
synonym: "CX3CR1 (Hsap), AIF1 (Hsap), LINC02712 (Hsap) expressing microglial cell of brain (Homo sapiens)" EXACT []
synonym: "Mgl_9" EXACT []
is_a: CL:0000129
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000168329 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000204472 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000273409 ! expresses
relationship: RO:0015004 PCL:0052510 ! has characterizing marker set NS forest marker set of Mgl_9 Hsap (Human).
property_value: IAO:0000028 "Mgl_9 (Human)" xsd:string
property_value: PCL:0010058 "AIF1 (Hsap)" xsd:string
property_value: PCL:0010058 "CX3CR1 (Hsap)" xsd:string
property_value: PCL:0010058 "LINC02712 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 27.2%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 15.0%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 16.6%."}
property_value: skos:prefLabel "Mgl_9" xsd:string
[Term]
id: PCL:0051011
name: Mgl_10 microglial cell (Hsap)
def: "A microglial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of DOCK8 (Hsap), P2RY12 (Hsap), LNCAROD (Hsap). The soma of these cells can be found in the basal forebrain, mesencephalon, cerebral cortex. The reference data for this cell type is CS202210140_11." [DOI:10.1126/science.add7046]
synonym: "DOCK8 (Hsap), P2RY12 (Hsap), LNCAROD (Hsap) expressing microglial cell of brain (Homo sapiens)" EXACT []
synonym: "Mgl_10" EXACT []
is_a: CL:0000129
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000107099 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000169313 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000231131 ! expresses
relationship: RO:0015004 PCL:0052511 ! has characterizing marker set NS forest marker set of Mgl_10 Hsap (Human).
property_value: IAO:0000028 "Mgl_10 (Human)" xsd:string
property_value: PCL:0010058 "DOCK8 (Hsap)" xsd:string
property_value: PCL:0010058 "LNCAROD (Hsap)" xsd:string
property_value: PCL:0010058 "P2RY12 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 10.3%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 27.7%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 22.1%."}
property_value: skos:prefLabel "Mgl_10" xsd:string
[Term]
id: PCL:0051012
name: Mgl_11 microglial cell (Hsap)
def: "A microglial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of P2RY12 (Hsap), LINC02642 (Hsap), LINC02712 (Hsap). The soma of these cells can be found in the cerebral cortex, hippocampal formation, thalamus. The reference data for this cell type is CS202210140_12." [DOI:10.1126/science.add7046]
synonym: "Mgl_11" EXACT []
synonym: "P2RY12 (Hsap), LINC02642 (Hsap), LINC02712 (Hsap) expressing microglial cell of brain (Homo sapiens)" EXACT []
is_a: CL:0000129
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000169313 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000232591 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000273409 ! expresses
relationship: RO:0015004 PCL:0052512 ! has characterizing marker set NS forest marker set of Mgl_11 Hsap (Human).
property_value: IAO:0000028 "Mgl_11 (Human)" xsd:string
property_value: PCL:0010058 "LINC02642 (Hsap)" xsd:string
property_value: PCL:0010058 "LINC02712 (Hsap)" xsd:string
property_value: PCL:0010058 "P2RY12 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 37.4%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 24.2%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 11.1%."}
property_value: skos:prefLabel "Mgl_11" xsd:string
[Term]
id: PCL:0051013
name: Mgl_12 microglial cell (Hsap)
def: "A microglial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of F13A1 (Hsap), MRC1 (Hsap). The soma of these cells can be found in the basal forebrain, cerebral cortex, cerebellum. The reference data for this cell type is CS202210140_13." [DOI:10.1126/science.add7046]
synonym: "F13A1 (Hsap), MRC1 (Hsap) expressing microglial cell of brain (Homo sapiens)" EXACT []
synonym: "Mgl_12" EXACT []
is_a: CL:0000129
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000124491 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000260314 ! expresses
relationship: RO:0015004 PCL:0052513 ! has characterizing marker set NS forest marker set of Mgl_12 Hsap (Human).
property_value: IAO:0000028 "Mgl_12 (Human)" xsd:string
property_value: PCL:0010058 "F13A1 (Hsap)" xsd:string
property_value: PCL:0010058 "MRC1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 14.0%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 29.4%."}
property_value: PCL:0010063 HBA:4696 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebellum: 12.2%."}
property_value: skos:prefLabel "Mgl_12" xsd:string
[Term]
id: PCL:0051014
name: VendPLVAP_13 brain vascular cell (Hsap)
def: "A brain vascular cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of PLVAP (Hsap). The soma of these cells can be found in the basal forebrain, myelencephalon. The reference data for this cell type is CS202210140_14." [DOI:10.1126/science.add7046]
synonym: "PLVAP (Hsap) expressing brain vascular cell of brain (Homo sapiens)" EXACT []
synonym: "VendPLVAP_13" EXACT []
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000130300 ! expresses
relationship: RO:0015004 PCL:0052514 ! has characterizing marker set NS forest marker set of VendPLVAP_13 Hsap (Human).
property_value: IAO:0000028 "VendPLVAP_13 (Human)" xsd:string
property_value: PCL:0010058 "PLVAP (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 74.0%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 23.3%."}
property_value: skos:prefLabel "VendPLVAP_13" xsd:string
[Term]
id: PCL:0051015
name: VendAC_14 brain vascular cell (Hsap)
def: "A brain vascular cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SEMA3G (Hsap), HERC2P3 (Hsap). The soma of these cells can be found in the hippocampal formation, cerebral cortex, thalamus. The reference data for this cell type is CS202210140_15." [DOI:10.1126/science.add7046]
synonym: "SEMA3G (Hsap), HERC2P3 (Hsap) expressing brain vascular cell of brain (Homo sapiens)" EXACT []
synonym: "VendAC_14" EXACT []
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000010319 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000180229 ! expresses
relationship: RO:0015004 PCL:0052515 ! has characterizing marker set NS forest marker set of VendAC_14 Hsap (Human).
property_value: IAO:0000028 "VendAC_14 (Human)" xsd:string
property_value: PCL:0010058 "HERC2P3 (Hsap)" xsd:string
property_value: PCL:0010058 "SEMA3G (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 23.3%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 23.8%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 10.3%."}
property_value: skos:prefLabel "VendAC_14" xsd:string
[Term]
id: PCL:0051016
name: VendC_15 capillary endothelial cell (Hsap)
def: "A capillary endothelial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of MECOM (Hsap), ABCG2 (Hsap), HMCN1 (Hsap). The soma of these cells can be found in the cerebral cortex, hippocampal formation, thalamus. The reference data for this cell type is CS202210140_16." [DOI:10.1126/science.add7046]
synonym: "MECOM (Hsap), ABCG2 (Hsap), HMCN1 (Hsap) expressing capillary endothelial cell of brain (Homo sapiens)" EXACT []
synonym: "VendC_15" EXACT []
is_a: CL:0002144 {comment="Inferred from expression of: FLT1, CLDN5, PECAM1, MFSD2A"}
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000085276 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000118777 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000143341 ! expresses
relationship: RO:0015004 PCL:0052516 ! has characterizing marker set NS forest marker set of VendC_15 Hsap (Human).
property_value: IAO:0000028 "VendC_15 (Human)" xsd:string
property_value: PCL:0010058 "ABCG2 (Hsap)" xsd:string
property_value: PCL:0010058 "HMCN1 (Hsap)" xsd:string
property_value: PCL:0010058 "MECOM (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 23.2%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 15.7%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 15.3%."}
property_value: skos:prefLabel "VendC_15" xsd:string
[Term]
id: PCL:0051017
name: VendVC_16 capillary endothelial cell (Hsap)
def: "A capillary endothelial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of MECOM (Hsap), TRPM6 (Hsap). The soma of these cells can be found in the cerebral cortex, hippocampal formation. The reference data for this cell type is CS202210140_17." [DOI:10.1126/science.add7046]
synonym: "MECOM (Hsap), TRPM6 (Hsap) expressing capillary endothelial cell of brain (Homo sapiens)" EXACT []
synonym: "VendVC_16" EXACT []
is_a: CL:0002144
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000085276 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000119121 ! expresses
relationship: RO:0015004 PCL:0052517 ! has characterizing marker set NS forest marker set of VendVC_16 Hsap (Human).
property_value: IAO:0000028 "VendVC_16 (Human)" xsd:string
property_value: PCL:0010058 "MECOM (Hsap)" xsd:string
property_value: PCL:0010058 "TRPM6 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 25.5%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 17.8%."}
property_value: skos:prefLabel "VendVC_16" xsd:string
[Term]
id: PCL:0051018
name: VendV_17 vein endothelial cell (Hsap)
def: "A vein endothelial cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of IL1R1 (Hsap), SRGN (Hsap). The soma of these cells can be found in the hypothalamus, myelencephalon, pons. The reference data for this cell type is CS202210140_18." [DOI:10.1126/science.add7046]
synonym: "IL1R1 (Hsap), SRGN (Hsap) expressing vein endothelial cell of brain (Homo sapiens)" EXACT []
synonym: "VendV_17" EXACT []
is_a: CL:0002543
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000115594 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000122862 ! expresses
relationship: RO:0015004 PCL:0052518 ! has characterizing marker set NS forest marker set of VendV_17 Hsap (Human).
property_value: IAO:0000028 "VendV_17 (Human)" xsd:string
property_value: PCL:0010058 "IL1R1 (Hsap)" xsd:string
property_value: PCL:0010058 "SRGN (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4540 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hypothalamus: 26.7%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 15.8%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 21.8%."}
property_value: skos:prefLabel "VendV_17" xsd:string
[Term]
id: PCL:0051019
name: VendA_18 endothelial cell of artery (Hsap)
def: "A endothelial cell of artery of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of MECOM (Hsap), MGP (Hsap). The soma of these cells can be found in the cerebral cortex, myelencephalon, thalamus. The reference data for this cell type is CS202210140_19." [DOI:10.1126/science.add7046]
synonym: "MECOM (Hsap), MGP (Hsap) expressing endothelial cell of artery of brain (Homo sapiens)" EXACT []
synonym: "VendA_18" EXACT []
is_a: CL:1000413 {comment="Inferred from expression of: FLT1, CLDN5, PECAM1, BMX, VEGFC, JUNB"}
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000085276 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000111341 ! expresses
relationship: RO:0015004 PCL:0052519 ! has characterizing marker set NS forest marker set of VendA_18 Hsap (Human).
property_value: IAO:0000028 "VendA_18 (Human)" xsd:string
property_value: PCL:0010058 "MECOM (Hsap)" xsd:string
property_value: PCL:0010058 "MGP (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 23.3%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 14.6%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 16.4%."}
property_value: skos:prefLabel "VendA_18" xsd:string
[Term]
id: PCL:0051020
name: Vsmc_19 brain vascular cell (Hsap)
def: "A brain vascular cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of MECOM (Hsap), ACTA2 (Hsap). The soma of these cells can be found in the thalamus, mesencephalon, myelencephalon. The reference data for this cell type is CS202210140_20." [DOI:10.1126/science.add7046]
synonym: "MECOM (Hsap), ACTA2 (Hsap) expressing brain vascular cell of brain (Homo sapiens)" EXACT []
synonym: "Vsmc_19" EXACT []
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000085276 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000107796 ! expresses
relationship: RO:0015004 PCL:0052520 ! has characterizing marker set NS forest marker set of Vsmc_19 Hsap (Human).
property_value: IAO:0000028 "Vsmc_19 (Human)" xsd:string
property_value: PCL:0010058 "ACTA2 (Hsap)" xsd:string
property_value: PCL:0010058 "MECOM (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 28.4%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 12.2%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 11.8%."}
property_value: skos:prefLabel "Vsmc_19" xsd:string
[Term]
id: PCL:0051021
name: Vsmc_20 smooth muscle cell of the brain vasculature (Hsap)
def: "A smooth muscle cell of the brain vasculature of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of ACTA2 (Hsap), TAGLN (Hsap). The soma of these cells can be found in the thalamus, cerebral cortex, myelencephalon. The reference data for this cell type is CS202210140_21." [DOI:10.1126/science.add7046]
synonym: "ACTA2 (Hsap), TAGLN (Hsap) expressing smooth muscle cell of the brain vasculature of brain (Homo sapiens)" EXACT []
synonym: "Vsmc_20" EXACT []
is_a: CL:0002590 {xref="https://doi.org/10.1002/dvdy.1200", xref="https://doi.org/10.1016/j.celrep.2017.05.019", xref="https://doi.org/10.1038/nn.4288", xref="https://doi.org/10.1096/fj.02-0340fje", comment="Inferred from expression of: PDGFRB, ACTA2, MYH11"}
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000107796 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000149591 ! expresses
relationship: RO:0015004 PCL:0052521 ! has characterizing marker set NS forest marker set of Vsmc_20 Hsap (Human).
property_value: IAO:0000028 "Vsmc_20 (Human)" xsd:string
property_value: PCL:0010058 "ACTA2 (Hsap)" xsd:string
property_value: PCL:0010058 "TAGLN (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 13.7%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 21.8%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 12.4%."}
property_value: skos:prefLabel "Vsmc_20" xsd:string
[Term]
id: PCL:0051022
name: Per_21 pericyte (Hsap)
def: "A pericyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of RERGL (Hsap), NDUFA4L2 (Hsap). The soma of these cells can be found in the thalamus, pons. The reference data for this cell type is CS202210140_22." [DOI:10.1126/science.add7046]
synonym: "Per_21" EXACT []
synonym: "RERGL (Hsap), NDUFA4L2 (Hsap) expressing pericyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000669 {xref="https://doi.org/10.1016/j.celrep.2017.05.019", xref="https://doi.org/10.1038/nn.4288", xref="https://doi.org/10.1096/fj.02-0340fje", comment="Inferred from expression of: PDGFRB, CSPG4"}
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000111404 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000185633 ! expresses
relationship: RO:0015004 PCL:0052522 ! has characterizing marker set NS forest marker set of Per_21 Hsap (Human).
property_value: IAO:0000028 "Per_21 (Human)" xsd:string
property_value: PCL:0010058 "NDUFA4L2 (Hsap)" xsd:string
property_value: PCL:0010058 "RERGL (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 28.3%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 17.9%."}
property_value: skos:prefLabel "Per_21" xsd:string
[Term]
id: PCL:0051023
name: Per_22 pericyte (Hsap)
def: "A pericyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SLC19A1 (Hsap), CARMN (Hsap). The soma of these cells can be found in the thalamus, cerebral cortex, basal forebrain. The reference data for this cell type is CS202210140_23." [DOI:10.1126/science.add7046]
synonym: "Per_22" EXACT []
synonym: "SLC19A1 (Hsap), CARMN (Hsap) expressing pericyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000669 {xref="https://doi.org/10.1016/j.celrep.2017.05.019", xref="https://doi.org/10.1038/nn.4288", xref="https://doi.org/10.1096/fj.02-0340fje", comment="Inferred from expression of: PDGFRB, CSPG4"}
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000173638 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000249669 ! expresses
relationship: RO:0015004 PCL:0052523 ! has characterizing marker set NS forest marker set of Per_22 Hsap (Human).
property_value: IAO:0000028 "Per_22 (Human)" xsd:string
property_value: PCL:0010058 "CARMN (Hsap)" xsd:string
property_value: PCL:0010058 "SLC19A1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 15.9%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 10.2%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 34.2%."}
property_value: skos:prefLabel "Per_22" xsd:string
[Term]
id: PCL:0051024
name: Per_23 brain vascular cell (Hsap)
def: "A brain vascular cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SLC6A13 (Hsap), ASPN (Hsap), SLC6A12 (Hsap). The soma of these cells can be found in the thalamus, cerebral cortex, basal forebrain. The reference data for this cell type is CS202210140_24." [DOI:10.1126/science.add7046]
synonym: "Per_23" EXACT []
synonym: "SLC6A13 (Hsap), ASPN (Hsap), SLC6A12 (Hsap) expressing brain vascular cell of brain (Homo sapiens)" EXACT []
is_a: CL:4023072
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000010379 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000106819 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000111181 ! expresses
relationship: RO:0015004 PCL:0052524 ! has characterizing marker set NS forest marker set of Per_23 Hsap (Human).
property_value: IAO:0000028 "Per_23 (Human)" xsd:string
property_value: PCL:0010058 "ASPN (Hsap)" xsd:string
property_value: PCL:0010058 "SLC6A12 (Hsap)" xsd:string
property_value: PCL:0010058 "SLC6A13 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 25.0%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 10.7%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 48.8%."}
property_value: skos:prefLabel "Per_23" xsd:string
[Term]
id: PCL:0051025
name: Fbl_24 fibroblast (Hsap)
def: "A fibroblast of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of BMP5 (Hsap), C7 (Hsap). The soma of these cells can be found in the basal forebrain, myelencephalon, hippocampal formation. The reference data for this cell type is CS202210140_25." [DOI:10.1126/science.add7046]
synonym: "BMP5 (Hsap), C7 (Hsap) expressing fibroblast of brain (Homo sapiens)" EXACT []
synonym: "Fbl_24" EXACT []
is_a: CL:0000057
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000112175 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000112936 ! expresses
relationship: RO:0015004 PCL:0052525 ! has characterizing marker set NS forest marker set of Fbl_24 Hsap (Human).
property_value: IAO:0000028 "Fbl_24 (Human)" xsd:string
property_value: PCL:0010058 "BMP5 (Hsap)" xsd:string
property_value: PCL:0010058 "C7 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 25.1%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 38.0%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 32.3%."}
property_value: skos:prefLabel "Fbl_24" xsd:string
[Term]
id: PCL:0051026
name: Fbl_25 fibroblast (Hsap)
def: "A fibroblast of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of TBX18 (Hsap), LTBP2 (Hsap). The soma of these cells can be found in the thalamus, cerebral cortex, pons. The reference data for this cell type is CS202210140_26." [DOI:10.1126/science.add7046]
synonym: "Fbl_25" EXACT []
synonym: "TBX18 (Hsap), LTBP2 (Hsap) expressing fibroblast of brain (Homo sapiens)" EXACT []
is_a: CL:0000057
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000112837 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000119681 ! expresses
relationship: RO:0015004 PCL:0052526 ! has characterizing marker set NS forest marker set of Fbl_25 Hsap (Human).
property_value: IAO:0000028 "Fbl_25 (Human)" xsd:string
property_value: PCL:0010058 "LTBP2 (Hsap)" xsd:string
property_value: PCL:0010058 "TBX18 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 20.0%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 22.3%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 15.0%."}
property_value: skos:prefLabel "Fbl_25" xsd:string
[Term]
id: PCL:0051027
name: Fbl_26 fibroblast (Hsap)
def: "A fibroblast of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SLC6A20 (Hsap), COL15A1 (Hsap). The soma of these cells can be found in the thalamus, basal forebrain, pons. The reference data for this cell type is CS202210140_27." [DOI:10.1126/science.add7046]
synonym: "Fbl_26" EXACT []
synonym: "SLC6A20 (Hsap), COL15A1 (Hsap) expressing fibroblast of brain (Homo sapiens)" EXACT []
is_a: CL:0000057
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000163817 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000204291 ! expresses
relationship: RO:0015004 PCL:0052527 ! has characterizing marker set NS forest marker set of Fbl_26 Hsap (Human).
property_value: IAO:0000028 "Fbl_26 (Human)" xsd:string
property_value: PCL:0010058 "COL15A1 (Hsap)" xsd:string
property_value: PCL:0010058 "SLC6A20 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 15.4%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 20.7%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 13.1%."}
property_value: skos:prefLabel "Fbl_26" xsd:string
[Term]
id: PCL:0051028
name: Fbl_27 fibroblast (Hsap)
def: "A fibroblast of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of FMO2 (Hsap), ABCA8 (Hsap), LINC02147 (Hsap). The soma of these cells can be found in the thalamus, cerebral cortex, pons. The reference data for this cell type is CS202210140_28." [DOI:10.1126/science.add7046]
synonym: "Fbl_27" EXACT []
synonym: "FMO2 (Hsap), ABCA8 (Hsap), LINC02147 (Hsap) expressing fibroblast of brain (Homo sapiens)" EXACT []
is_a: CL:0000057
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000094963 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000141338 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000249797 ! expresses
relationship: RO:0015004 PCL:0052528 ! has characterizing marker set NS forest marker set of Fbl_27 Hsap (Human).
property_value: IAO:0000028 "Fbl_27 (Human)" xsd:string
property_value: PCL:0010058 "ABCA8 (Hsap)" xsd:string
property_value: PCL:0010058 "FMO2 (Hsap)" xsd:string
property_value: PCL:0010058 "LINC02147 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 15.0%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 34.3%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 13.3%."}
property_value: skos:prefLabel "Fbl_27" xsd:string
[Term]
id: PCL:0051029
name: Fbl_28 fibroblast (Hsap)
def: "A fibroblast of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of C7 (Hsap), FBLN2 (Hsap), COL1A2 (Hsap). The soma of these cells can be found in the thalamus, cerebral cortex, pons. The reference data for this cell type is CS202210140_29." [DOI:10.1126/science.add7046]
synonym: "C7 (Hsap), FBLN2 (Hsap), COL1A2 (Hsap) expressing fibroblast of brain (Homo sapiens)" EXACT []
synonym: "Fbl_28" EXACT []
is_a: CL:0000057
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000112936 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000163520 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000164692 ! expresses
relationship: RO:0015004 PCL:0052529 ! has characterizing marker set NS forest marker set of Fbl_28 Hsap (Human).
property_value: IAO:0000028 "Fbl_28 (Human)" xsd:string
property_value: PCL:0010058 "C7 (Hsap)" xsd:string
property_value: PCL:0010058 "COL1A2 (Hsap)" xsd:string
property_value: PCL:0010058 "FBLN2 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 12.1%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 36.4%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 11.0%."}
property_value: skos:prefLabel "Fbl_28" xsd:string
[Term]
id: PCL:0051030
name: Fbl_29 fibroblast (Hsap)
def: "A fibroblast of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SLC2A1 (Hsap), BMPR1B (Hsap), EBF2 (Hsap). The soma of these cells can be found in the myelencephalon, spinal cord. The reference data for this cell type is CS202210140_30." [DOI:10.1126/science.add7046]
synonym: "Fbl_29" EXACT []
synonym: "SLC2A1 (Hsap), BMPR1B (Hsap), EBF2 (Hsap) expressing fibroblast of brain (Homo sapiens)" EXACT []
is_a: CL:0000057
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000117394 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000138696 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000221818 ! expresses
relationship: RO:0015004 PCL:0052530 ! has characterizing marker set NS forest marker set of Fbl_29 Hsap (Human).
property_value: IAO:0000028 "Fbl_29 (Human)" xsd:string
property_value: PCL:0010058 "BMPR1B (Hsap)" xsd:string
property_value: PCL:0010058 "EBF2 (Hsap)" xsd:string
property_value: PCL:0010058 "SLC2A1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 41.3%."}
property_value: PCL:0010063 UBERON:0002240 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Spinal cord: 39.7%."}
property_value: skos:prefLabel "Fbl_29" xsd:string
[Term]
id: PCL:0051031
name: Fbl_30 fibroblast (Hsap)
def: "A fibroblast of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SLC5A5 (Hsap), RP11-354K4.2 (Hsap). The soma of these cells can be found in the cerebral cortex, basal forebrain, myelencephalon. The reference data for this cell type is CS202210140_31." [DOI:10.1126/science.add7046]
synonym: "Fbl_30" EXACT []
synonym: "SLC5A5 (Hsap), RP11-354K4.2 (Hsap) expressing fibroblast of brain (Homo sapiens)" EXACT []
is_a: CL:0000057
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000105641 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000271945 ! expresses
relationship: RO:0015004 PCL:0052531 ! has characterizing marker set NS forest marker set of Fbl_30 Hsap (Human).
property_value: IAO:0000028 "Fbl_30 (Human)" xsd:string
property_value: PCL:0010058 "RP11-354K4.2 (Hsap)" xsd:string
property_value: PCL:0010058 "SLC5A5 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 35.3%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 29.7%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 10.6%."}
property_value: skos:prefLabel "Fbl_30" xsd:string
[Term]
id: PCL:0051032
name: Fbl_31 arachnoid barrier cell (Hsap)
def: "A arachnoid barrier cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of PTGDR (Hsap), BNC2 (Hsap). The soma of these cells can be found in the basal forebrain, myelencephalon, hypothalamus. The reference data for this cell type is CS202210140_32." [DOI:10.1126/science.add7046]
synonym: "Fbl_31" EXACT []
synonym: "PTGDR (Hsap), BNC2 (Hsap) expressing arachnoid barrier cell of brain (Homo sapiens)" EXACT []
is_a: CL:0000057
is_a: CL:4023097 {xref="https://doi.org/10.1016/j.devcel.2020.06.009", comment="Inferred from expression of: AQP4, GDF10, GABRG3, WIF1, LGR6"}
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000168229 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000173068 ! expresses
relationship: RO:0015004 PCL:0052532 ! has characterizing marker set NS forest marker set of Fbl_31 Hsap (Human).
property_value: IAO:0000028 "Fbl_31 (Human)" xsd:string
property_value: PCL:0010058 "BNC2 (Hsap)" xsd:string
property_value: PCL:0010058 "PTGDR (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 47.3%."}
property_value: PCL:0010063 HBA:4540 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hypothalamus: 12.4%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 20.3%."}
property_value: skos:prefLabel "Fbl_31" xsd:string
[Term]
id: PCL:0051033
name: OPC_32 oligodendrocyte precursor cell (Hsap)
def: "A oligodendrocyte precursor cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of MROH9 (Hsap), RP1-45C12.1 (Hsap). The soma of these cells can be found in the hypothalamus, thalamus. The reference data for this cell type is CS202210140_33." [DOI:10.1126/science.add7046]
synonym: "MROH9 (Hsap), RP1-45C12.1 (Hsap) expressing oligodendrocyte precursor cell of brain (Homo sapiens)" EXACT []
synonym: "OPC_32" EXACT []
is_a: CL:0002453
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000117501 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000231424 ! expresses
relationship: RO:0015004 PCL:0052533 ! has characterizing marker set NS forest marker set of OPC_32 Hsap (Human).
property_value: IAO:0000028 "OPC_32 (Human)" xsd:string
property_value: PCL:0010058 "MROH9 (Hsap)" xsd:string
property_value: PCL:0010058 "RP1-45C12.1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 16.6%."}
property_value: PCL:0010063 HBA:4540 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hypothalamus: 54.7%."}
property_value: skos:prefLabel "OPC_32" xsd:string
[Term]
id: PCL:0051034
name: OPC_33 oligodendrocyte precursor cell (Hsap)
def: "A oligodendrocyte precursor cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of OLIG1 (Hsap), APOD (Hsap), RP1-45C12.1 (Hsap). The soma of these cells can be found in the pons, mesencephalon, thalamus. The reference data for this cell type is CS202210140_34." [DOI:10.1126/science.add7046]
synonym: "OLIG1 (Hsap), APOD (Hsap), RP1-45C12.1 (Hsap) expressing oligodendrocyte precursor cell of brain (Homo sapiens)" EXACT []
synonym: "OPC_33" EXACT []
is_a: CL:0002453
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000184221 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000189058 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000231424 ! expresses
relationship: RO:0015004 PCL:0052534 ! has characterizing marker set NS forest marker set of OPC_33 Hsap (Human).
property_value: IAO:0000028 "OPC_33 (Human)" xsd:string
property_value: PCL:0010058 "APOD (Hsap)" xsd:string
property_value: PCL:0010058 "OLIG1 (Hsap)" xsd:string
property_value: PCL:0010058 "RP1-45C12.1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 19.2%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 22.9%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 23.8%."}
property_value: skos:prefLabel "OPC_33" xsd:string
[Term]
id: PCL:0051035
name: OPC_34 oligodendrocyte precursor cell (Hsap)
def: "A oligodendrocyte precursor cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of OLIG1 (Hsap), RP4-668E10.4 (Hsap), RP11-197H3.1 (Hsap). The soma of these cells can be found in the hippocampal formation, cerebral cortex, amygdala. The reference data for this cell type is CS202210140_35." [DOI:10.1126/science.add7046]
synonym: "OLIG1 (Hsap), RP4-668E10.4 (Hsap), RP11-197H3.1 (Hsap) expressing oligodendrocyte precursor cell of brain (Homo sapiens)" EXACT []
synonym: "OPC_34" EXACT []
is_a: CL:0002453
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000184221 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000278254 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000286778 ! expresses
relationship: RO:0015004 PCL:0052535 ! has characterizing marker set NS forest marker set of OPC_34 Hsap (Human).
property_value: IAO:0000028 "OPC_34 (Human)" xsd:string
property_value: PCL:0010058 "OLIG1 (Hsap)" xsd:string
property_value: PCL:0010058 "RP11-197H3.1 (Hsap)" xsd:string
property_value: PCL:0010058 "RP4-668E10.4 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 30.9%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 33.6%."}
property_value: PCL:0010063 HBA:4327 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Amygdala: 16.5%."}
property_value: skos:prefLabel "OPC_34" xsd:string
[Term]
id: PCL:0051036
name: OPC_35 oligodendrocyte precursor cell (Hsap)
def: "A oligodendrocyte precursor cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of OLIG1 (Hsap), MIR3681HG (Hsap), RP4-668E10.4 (Hsap). The soma of these cells can be found in the cerebral cortex, hippocampal formation. The reference data for this cell type is CS202210140_36." [DOI:10.1126/science.add7046]
synonym: "OLIG1 (Hsap), MIR3681HG (Hsap), RP4-668E10.4 (Hsap) expressing oligodendrocyte precursor cell of brain (Homo sapiens)" EXACT []
synonym: "OPC_35" EXACT []
is_a: CL:0002453
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000184221 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000224184 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000278254 ! expresses
relationship: RO:0015004 PCL:0052536 ! has characterizing marker set NS forest marker set of OPC_35 Hsap (Human).
property_value: IAO:0000028 "OPC_35 (Human)" xsd:string
property_value: PCL:0010058 "MIR3681HG (Hsap)" xsd:string
property_value: PCL:0010058 "OLIG1 (Hsap)" xsd:string
property_value: PCL:0010058 "RP4-668E10.4 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 62.3%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 21.4%."}
property_value: skos:prefLabel "OPC_35" xsd:string
[Term]
id: PCL:0051037
name: OPC_36 oligodendrocyte precursor cell (Hsap)
def: "A oligodendrocyte precursor cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of LINC01608 (Hsap), RP4-668E10.4 (Hsap). The soma of these cells can be found in the cerebral cortex, thalamus, mesencephalon. The reference data for this cell type is CS202210140_37." [DOI:10.1126/science.add7046]
synonym: "LINC01608 (Hsap), RP4-668E10.4 (Hsap) expressing oligodendrocyte precursor cell of brain (Homo sapiens)" EXACT []
synonym: "OPC_36" EXACT []
is_a: CL:0002453
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000253877 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000278254 ! expresses
relationship: RO:0015004 PCL:0052537 ! has characterizing marker set NS forest marker set of OPC_36 Hsap (Human).
property_value: IAO:0000028 "OPC_36 (Human)" xsd:string
property_value: PCL:0010058 "LINC01608 (Hsap)" xsd:string
property_value: PCL:0010058 "RP4-668E10.4 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 33.7%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 12.5%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 11.5%."}
property_value: skos:prefLabel "OPC_36" xsd:string
[Term]
id: PCL:0051038
name: COP_37 differentiation-committed oligodendrocyte precursor (Hsap)
def: "A differentiation-committed oligodendrocyte precursor of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of BCAS1 (Hsap), PRRX1 (Hsap), GPR17 (Hsap). The soma of these cells can be found in the cerebral cortex, hippocampal formation. The reference data for this cell type is CS202210140_38." [DOI:10.1126/science.add7046]
synonym: "BCAS1 (Hsap), PRRX1 (Hsap), GPR17 (Hsap) expressing differentiation-committed oligodendrocyte precursor of brain (Homo sapiens)" EXACT []
synonym: "COP_37" EXACT []
is_a: CL:4023059
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000064787 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000116132 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000144230 ! expresses
relationship: RO:0015004 PCL:0052538 ! has characterizing marker set NS forest marker set of COP_37 Hsap (Human).
property_value: IAO:0000028 "COP_37 (Human)" xsd:string
property_value: PCL:0010058 "BCAS1 (Hsap)" xsd:string
property_value: PCL:0010058 "GPR17 (Hsap)" xsd:string
property_value: PCL:0010058 "PRRX1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 35.6%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 19.5%."}
property_value: skos:prefLabel "COP_37" xsd:string
[Term]
id: PCL:0051039
name: COP_38 differentiation-committed oligodendrocyte precursor (Hsap)
def: "A differentiation-committed oligodendrocyte precursor of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of BCAS1 (Hsap), RP11-89N17.4 (Hsap). The soma of these cells can be found in the hippocampal formation, cerebral cortex. The reference data for this cell type is CS202210140_39." [DOI:10.1126/science.add7046]
synonym: "BCAS1 (Hsap), RP11-89N17.4 (Hsap) expressing differentiation-committed oligodendrocyte precursor of brain (Homo sapiens)" EXACT []
synonym: "COP_38" EXACT []
is_a: CL:4023059
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000064787 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000236494 ! expresses
relationship: RO:0015004 PCL:0052539 ! has characterizing marker set NS forest marker set of COP_38 Hsap (Human).
property_value: IAO:0000028 "COP_38 (Human)" xsd:string
property_value: PCL:0010058 "BCAS1 (Hsap)" xsd:string
property_value: PCL:0010058 "RP11-89N17.4 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 29.5%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 29.9%."}
property_value: skos:prefLabel "COP_38" xsd:string
[Term]
id: PCL:0051040
name: COP_39 differentiation-committed oligodendrocyte precursor (Hsap)
def: "A differentiation-committed oligodendrocyte precursor of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of TF (Hsap), CTD-2545M3.8 (Hsap). The soma of these cells can be found in the cerebral cortex, hippocampal formation, amygdala. The reference data for this cell type is CS202210140_40." [DOI:10.1126/science.add7046]
synonym: "COP_39" EXACT []
synonym: "TF (Hsap), CTD-2545M3.8 (Hsap) expressing differentiation-committed oligodendrocyte precursor of brain (Homo sapiens)" EXACT []
is_a: CL:4023059
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000091513 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000268518 ! expresses
relationship: RO:0015004 PCL:0052540 ! has characterizing marker set NS forest marker set of COP_39 Hsap (Human).
property_value: IAO:0000028 "COP_39 (Human)" xsd:string
property_value: PCL:0010058 "CTD-2545M3.8 (Hsap)" xsd:string
property_value: PCL:0010058 "TF (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 28.1%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 19.7%."}
property_value: PCL:0010063 HBA:4327 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Amygdala: 14.6%."}
property_value: skos:prefLabel "COP_39" xsd:string
[Term]
id: PCL:0051041
name: Oligo_40 oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of PLP1 (Hsap), ERBB4 (Hsap), OPALIN (Hsap). The soma of these cells can be found in the hippocampal formation, cerebral cortex, amygdala. The reference data for this cell type is CS202210140_41." [DOI:10.1126/science.add7046]
synonym: "Oligo_40" EXACT []
synonym: "PLP1 (Hsap), ERBB4 (Hsap), OPALIN (Hsap) expressing oligodendrocyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000123560 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000178568 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000197430 ! expresses
relationship: RO:0015004 PCL:0052541 ! has characterizing marker set NS forest marker set of Oligo_40 Hsap (Human).
property_value: IAO:0000028 "Oligo_40 (Human)" xsd:string
property_value: PCL:0010058 "ERBB4 (Hsap)" xsd:string
property_value: PCL:0010058 "OPALIN (Hsap)" xsd:string
property_value: PCL:0010058 "PLP1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 23.4%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 24.8%."}
property_value: PCL:0010063 HBA:4327 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Amygdala: 10.0%."}
property_value: skos:prefLabel "Oligo_40" xsd:string
[Term]
id: PCL:0051042
name: COP_41 differentiation-committed oligodendrocyte precursor (Hsap)
def: "A differentiation-committed oligodendrocyte precursor of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of OPALIN (Hsap), AC084149.2 (Hsap). The soma of these cells can be found in the amygdala, hypothalamus, basal forebrain. The reference data for this cell type is CS202210140_42." [DOI:10.1126/science.add7046]
synonym: "COP_41" EXACT []
synonym: "OPALIN (Hsap), AC084149.2 (Hsap) expressing differentiation-committed oligodendrocyte precursor of brain (Homo sapiens)" EXACT []
is_a: CL:4023059
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000197430 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000227088 ! expresses
relationship: RO:0015004 PCL:0052542 ! has characterizing marker set NS forest marker set of COP_41 Hsap (Human).
property_value: IAO:0000028 "COP_41 (Human)" xsd:string
property_value: PCL:0010058 "AC084149.2 (Hsap)" xsd:string
property_value: PCL:0010058 "OPALIN (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 20.2%."}
property_value: PCL:0010063 HBA:4327 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Amygdala: 24.7%."}
property_value: PCL:0010063 HBA:4540 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hypothalamus: 23.3%."}
property_value: skos:prefLabel "COP_41" xsd:string
[Term]
id: PCL:0051043
name: COP_42 differentiation-committed oligodendrocyte precursor (Hsap)
def: "A differentiation-committed oligodendrocyte precursor of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of CNDP1 (Hsap), NTNG1 (Hsap), LINC01608 (Hsap). The soma of these cells can be found in the thalamus. The reference data for this cell type is CS202210140_43." [DOI:10.1126/science.add7046]
synonym: "CNDP1 (Hsap), NTNG1 (Hsap), LINC01608 (Hsap) expressing differentiation-committed oligodendrocyte precursor of brain (Homo sapiens)" EXACT []
synonym: "COP_42" EXACT []
is_a: CL:4023059
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000150656 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000162631 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000253877 ! expresses
relationship: RO:0015004 PCL:0052543 ! has characterizing marker set NS forest marker set of COP_42 Hsap (Human).
property_value: IAO:0000028 "COP_42 (Human)" xsd:string
property_value: PCL:0010058 "CNDP1 (Hsap)" xsd:string
property_value: PCL:0010058 "LINC01608 (Hsap)" xsd:string
property_value: PCL:0010058 "NTNG1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 92.7%."}
property_value: skos:prefLabel "COP_42" xsd:string
[Term]
id: PCL:0051044
name: COP_43 differentiation-committed oligodendrocyte precursor (Hsap)
def: "A differentiation-committed oligodendrocyte precursor of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SLC5A11 (Hsap), MOBP (Hsap). The soma of these cells can be found in the thalamus, hypothalamus, amygdala. The reference data for this cell type is CS202210140_44." [DOI:10.1126/science.add7046]
synonym: "COP_43" EXACT []
synonym: "SLC5A11 (Hsap), MOBP (Hsap) expressing differentiation-committed oligodendrocyte precursor of brain (Homo sapiens)" EXACT []
is_a: CL:4023059
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000158865 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000168314 ! expresses
relationship: RO:0015004 PCL:0052544 ! has characterizing marker set NS forest marker set of COP_43 Hsap (Human).
property_value: IAO:0000028 "COP_43 (Human)" xsd:string
property_value: PCL:0010058 "MOBP (Hsap)" xsd:string
property_value: PCL:0010058 "SLC5A11 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4327 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Amygdala: 10.3%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 36.2%."}
property_value: PCL:0010063 HBA:4540 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hypothalamus: 18.0%."}
property_value: skos:prefLabel "COP_43" xsd:string
[Term]
id: PCL:0051045
name: Oligo_44 oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of TF (Hsap), SLC5A11 (Hsap), CARNS1 (Hsap), MOBP (Hsap), ANLN (Hsap). The soma of these cells can be found in the thalamus, pons, mesencephalon. The reference data for this cell type is CS202210140_45." [DOI:10.1126/science.add7046]
synonym: "Oligo_44" EXACT []
synonym: "TF (Hsap), SLC5A11 (Hsap), CARNS1 (Hsap), MOBP (Hsap), ANLN (Hsap) expressing oligodendrocyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000011426 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000091513 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000158865 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000168314 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000172508 ! expresses
relationship: RO:0015004 PCL:0052545 ! has characterizing marker set NS forest marker set of Oligo_44 Hsap (Human).
property_value: IAO:0000028 "Oligo_44 (Human)" xsd:string
property_value: PCL:0010058 "ANLN (Hsap)" xsd:string
property_value: PCL:0010058 "CARNS1 (Hsap)" xsd:string
property_value: PCL:0010058 "MOBP (Hsap)" xsd:string
property_value: PCL:0010058 "SLC5A11 (Hsap)" xsd:string
property_value: PCL:0010058 "TF (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 20.9%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 19.1%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 19.2%."}
property_value: skos:prefLabel "Oligo_44" xsd:string
[Term]
id: PCL:0051046
name: Oligo_45 oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SLC5A11 (Hsap), CERCAM (Hsap), MOBP (Hsap), OPALIN (Hsap). The soma of these cells can be found in the cerebral cortex, basal forebrain, mesencephalon. The reference data for this cell type is CS202210140_46." [DOI:10.1126/science.add7046]
synonym: "Oligo_45" EXACT []
synonym: "SLC5A11 (Hsap), CERCAM (Hsap), MOBP (Hsap), OPALIN (Hsap) expressing oligodendrocyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000158865 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000167123 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000168314 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000197430 ! expresses
relationship: RO:0015004 PCL:0052546 ! has characterizing marker set NS forest marker set of Oligo_45 Hsap (Human).
property_value: IAO:0000028 "Oligo_45 (Human)" xsd:string
property_value: PCL:0010058 "CERCAM (Hsap)" xsd:string
property_value: PCL:0010058 "MOBP (Hsap)" xsd:string
property_value: PCL:0010058 "OPALIN (Hsap)" xsd:string
property_value: PCL:0010058 "SLC5A11 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 20.0%."}
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 18.5%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 15.8%."}
property_value: skos:prefLabel "Oligo_45" xsd:string
[Term]
id: PCL:0051047
name: Oligo_46 oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of RNASE1 (Hsap), CNDP1 (Hsap), LINC01608 (Hsap). The soma of these cells can be found in the thalamus, mesencephalon, cerebral cortex. The reference data for this cell type is CS202210140_47." [DOI:10.1126/science.add7046]
synonym: "Oligo_46" EXACT []
synonym: "RNASE1 (Hsap), CNDP1 (Hsap), LINC01608 (Hsap) expressing oligodendrocyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000129538 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000150656 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000253877 ! expresses
relationship: RO:0015004 PCL:0052547 ! has characterizing marker set NS forest marker set of Oligo_46 Hsap (Human).
property_value: IAO:0000028 "Oligo_46 (Human)" xsd:string
property_value: PCL:0010058 "CNDP1 (Hsap)" xsd:string
property_value: PCL:0010058 "LINC01608 (Hsap)" xsd:string
property_value: PCL:0010058 "RNASE1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 13.7%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 22.7%."}
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 19.9%."}
property_value: skos:prefLabel "Oligo_46" xsd:string
[Term]
id: PCL:0051048
name: Oligo_47 oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of PLP1 (Hsap), OPALIN (Hsap), LINC01608 (Hsap). The soma of these cells can be found in the thalamus, cerebral cortex, hippocampal formation. The reference data for this cell type is CS202210140_48." [DOI:10.1126/science.add7046]
synonym: "Oligo_47" EXACT []
synonym: "PLP1 (Hsap), OPALIN (Hsap), LINC01608 (Hsap) expressing oligodendrocyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000123560 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000197430 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000253877 ! expresses
relationship: RO:0015004 PCL:0052548 ! has characterizing marker set NS forest marker set of Oligo_47 Hsap (Human).
property_value: IAO:0000028 "Oligo_47 (Human)" xsd:string
property_value: PCL:0010058 "LINC01608 (Hsap)" xsd:string
property_value: PCL:0010058 "OPALIN (Hsap)" xsd:string
property_value: PCL:0010058 "PLP1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4008 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Cerebral cortex: 20.9%."}
property_value: PCL:0010063 HBA:4249 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hippocampus: 13.8%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 24.9%."}
property_value: skos:prefLabel "Oligo_47" xsd:string
[Term]
id: PCL:0051049
name: Oligo_48 oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of OPALIN (Hsap), RP11-38B6.1 (Hsap). The soma of these cells can be found in the basal forebrain, thalamus. The reference data for this cell type is CS202210140_49." [DOI:10.1126/science.add7046]
synonym: "Oligo_48" EXACT []
synonym: "OPALIN (Hsap), RP11-38B6.1 (Hsap) expressing oligodendrocyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000197430 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000287069 ! expresses
relationship: RO:0015004 PCL:0052549 ! has characterizing marker set NS forest marker set of Oligo_48 Hsap (Human).
property_value: IAO:0000028 "Oligo_48 (Human)" xsd:string
property_value: PCL:0010058 "OPALIN (Hsap)" xsd:string
property_value: PCL:0010058 "RP11-38B6.1 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4300 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Basal forebrain: 47.8%."}
property_value: PCL:0010063 HBA:4392 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Thalamus: 42.2%."}
property_value: skos:prefLabel "Oligo_48" xsd:string
[Term]
id: PCL:0051050
name: Oligo_49 oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of TF (Hsap), SLC5A11 (Hsap), CRYAB (Hsap), CARNS1 (Hsap), AC084149.2 (Hsap). The soma of these cells can be found in the pons, mesencephalon, myelencephalon. The reference data for this cell type is CS202210140_50." [DOI:10.1126/science.add7046]
synonym: "Oligo_49" EXACT []
synonym: "TF (Hsap), SLC5A11 (Hsap), CRYAB (Hsap), CARNS1 (Hsap), AC084149.2 (Hsap) expressing oligodendrocyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000091513 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000109846 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000158865 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000172508 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000227088 ! expresses
relationship: RO:0015004 PCL:0052550 ! has characterizing marker set NS forest marker set of Oligo_49 Hsap (Human).
property_value: IAO:0000028 "Oligo_49 (Human)" xsd:string
property_value: PCL:0010058 "AC084149.2 (Hsap)" xsd:string
property_value: PCL:0010058 "CARNS1 (Hsap)" xsd:string
property_value: PCL:0010058 "CRYAB (Hsap)" xsd:string
property_value: PCL:0010058 "SLC5A11 (Hsap)" xsd:string
property_value: PCL:0010058 "TF (Hsap)" xsd:string
property_value: PCL:0010063 HBA:9001 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Midbrain: 20.2%."}
property_value: PCL:0010063 HBA:9131 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Pons: 30.3%."}
property_value: PCL:0010063 HBA:9512 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Medulla: 12.2%."}
property_value: skos:prefLabel "Oligo_49" xsd:string
[Term]
id: PCL:0051051
name: Oligo_50 oligodendrocyte (Hsap)
def: "A oligodendrocyte of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of SLC5A11 (Hsap), PTCSC3 (Hsap). The soma of these cells can be found in the hypothalamus. The reference data for this cell type is CS202210140_51." [DOI:10.1126/science.add7046]
synonym: "Oligo_50" EXACT []
synonym: "SLC5A11 (Hsap), PTCSC3 (Hsap) expressing oligodendrocyte of brain (Homo sapiens)" EXACT []
is_a: CL:0000128
relationship: BFO:0000050 HBA:4005
relationship: RO:0002162 NCBITaxon:9606
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000158865 ! expresses
relationship: RO:0002292 http://identifiers.org/ensembl/ENSG00000259104 ! expresses
relationship: RO:0015004 PCL:0052551 ! has characterizing marker set NS forest marker set of Oligo_50 Hsap (Human).
property_value: IAO:0000028 "Oligo_50 (Human)" xsd:string
property_value: PCL:0010058 "PTCSC3 (Hsap)" xsd:string
property_value: PCL:0010058 "SLC5A11 (Hsap)" xsd:string
property_value: PCL:0010063 HBA:4540 {comment="Location assignment based on origin of cells in brain dissections with a cut-off of 10% to account for dissection errors Hypothalamus: 90.7%."}
property_value: skos:prefLabel "Oligo_50" xsd:string