From 3542b27549e4b1dfa45408f5dde3ace732e3e558 Mon Sep 17 00:00:00 2001 From: Charles Kawczynski Date: Tue, 12 Nov 2024 22:21:09 -0500 Subject: [PATCH] Environment updates --- {perf => .buildkite}/Manifest.toml | 1477 ++++++++++++++++++---------- {perf => .buildkite}/Project.toml | 44 +- .buildkite/pipeline.yml | 147 ++- .dev/Manifest.toml | 131 +-- Project.toml | 2 +- docs/Manifest.toml | 69 +- docs/Project.toml | 2 +- test/Project.toml | 2 +- test/callbacks.jl | 3 +- 9 files changed, 1094 insertions(+), 783 deletions(-) rename {perf => .buildkite}/Manifest.toml (58%) rename {perf => .buildkite}/Project.toml (61%) diff --git a/perf/Manifest.toml b/.buildkite/Manifest.toml similarity index 58% rename from perf/Manifest.toml rename to .buildkite/Manifest.toml index 3433afb5..eab66fa0 100644 --- a/perf/Manifest.toml +++ b/.buildkite/Manifest.toml @@ -1,66 +1,88 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.4" +julia_version = "1.10.6" manifest_format = "2.0" -project_hash = "91043b753f41ba20c16213c104ebfdb72952bef4" +project_hash = "8c1158513d32dc08d4dad3376a95c8915662a919" [[deps.ADTypes]] -git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" +git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.6.1" -weakdeps = ["ChainRulesCore", "EnzymeCore"] +version = "1.9.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" ADTypesEnzymeCoreExt = "EnzymeCore" + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] [deps.AbstractFFTs.extensions] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" + [deps.AbstractFFTs.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" [[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] -git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a" +deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"] +git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.37" +version = "0.1.38" [deps.Accessors.extensions] AccessorsAxisKeysExt = "AxisKeys" + AccessorsDatesExt = "Dates" AccessorsIntervalSetsExt = "IntervalSets" AccessorsStaticArraysExt = "StaticArrays" AccessorsStructArraysExt = "StructArrays" + AccessorsTestExt = "Test" AccessorsUnitfulExt = "Unitful" [deps.Accessors.weakdeps] AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" Requires = "ae029012-a4dd-5104-9daa-d747884805df" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.4" +version = "4.1.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.Aqua]] +deps = ["Compat", "Pkg", "Test"] +git-tree-sha1 = "49b1d7a9870c87ba13dc63f8ccfcf578cb266f95" +uuid = "4c88cf16-eb10-579e-8560-4a9242c79595" +version = "0.8.9" + [[deps.ArgParse]] deps = ["Logging", "TextWrap"] git-tree-sha1 = "22cf435ac22956a7b45b0168abbc871176e7eecc" @@ -71,28 +93,23 @@ version = "1.2.0" uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" -[[deps.ArnoldiMethod]] -deps = ["LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" -uuid = "ec485272-7323-5ecc-a04f-4719b315124d" -version = "0.4.0" - [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "8c5b39db37c1d0340bf3b14895fba160c2d6cbb5" +git-tree-sha1 = "d60a1922358aa203019b7857a2c8c37329b8736c" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.14.0" +version = "7.17.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysExt = "StaticArrays" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] @@ -101,17 +118,18 @@ version = "7.14.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "ce2ca959f932f5dad70697dd93133d1167cf1e4e" +git-tree-sha1 = "492681bc44fac86804706ddb37da10880a2bd528" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.10.2" +version = "1.10.4" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -134,9 +152,9 @@ version = "0.5.0" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "71f605effb24081b09cae943ba39ef9ca90c04f4" +git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.7.2" +version = "1.7.5" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -151,6 +169,11 @@ git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" version = "1.5.0" +[[deps.BitFlags]] +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.9" + [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" @@ -159,9 +182,9 @@ version = "0.1.6" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "5c0ffe1dff8cb7112de075f1b1cb32191675fcba" +git-tree-sha1 = "d434647f798823bcae510aee0bc0401927f64391" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.1.0" +version = "1.1.1" weakdeps = ["BandedMatrices"] [deps.BlockArrays.extensions] @@ -174,9 +197,9 @@ version = "1.2.2" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+1" +version = "1.0.8+2" [[deps.CEnum]] git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" @@ -190,80 +213,77 @@ uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.6" [[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] -git-tree-sha1 = "fdd9dfb67dfefd548f51000cc400bb51003de247" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics", "demumble_jll"] +git-tree-sha1 = "e0725a467822697171af4dae15cec10b4fc19053" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.4.3" -weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] +version = "5.5.2" [deps.CUDA.extensions] ChainRulesCoreExt = "ChainRulesCore" EnzymeCoreExt = "EnzymeCore" SpecialFunctionsExt = "SpecialFunctions" + [deps.CUDA.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" + [[deps.CUDA_Driver_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "97df9d4d6be8ac6270cb8fd3b8fc413690820cbd" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ccd1e54610c222fadfd4737dac66bff786f63656" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.9.1+1" +version = "0.10.3+0" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "f3b237289a5a77c759b2dd5d4c2ff641d67c4030" +git-tree-sha1 = "33576c7c1b2500f8e7e6baa082e04563203b3a45" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.3.4" +version = "0.3.5" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "afea94249b821dc754a8ca6695d3daed851e1f5a" +git-tree-sha1 = "e43727b237b2879a34391eeb81887699a26f8f2f" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.14.1+0" +version = "0.15.3+0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+2" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.24.0" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" +version = "1.18.2+1" [[deps.ClimaComms]] -git-tree-sha1 = "2ca8c9ca6131a7be8ca262e6db79bc7aa94ab597" +git-tree-sha1 = "ec303a4a66dc0a0ebe15a639a7e685afeaa0daef" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.6.3" +version = "0.6.4" +weakdeps = ["CUDA", "MPI"] [deps.ClimaComms.extensions] ClimaCommsCUDAExt = "CUDA" ClimaCommsMPIExt = "MPI" - [deps.ClimaComms.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" - [[deps.ClimaCore]] -deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "fa5335ad4b4596c70882c42366172b52aad7a499" +deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"] +git-tree-sha1 = "7632911d7b09fb3e067984626b07b3eb1113e55e" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.14.10" +version = "0.14.20" weakdeps = ["CUDA", "Krylov"] [deps.ClimaCore.extensions] ClimaCoreCUDAExt = "CUDA" KrylovExt = "Krylov" +[[deps.ClimaCorePlots]] +deps = ["ClimaComms", "ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] +git-tree-sha1 = "6430644d60158055458075bf32e5ac24741b1ab9" +uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626" +version = "0.2.11" + [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -path = ".." +git-tree-sha1 = "dbc1d2c495f118c36a83fa93cd5311fe3a32f615" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.33" +version = "0.7.38" weakdeps = ["BenchmarkTools", "CUDA", "OrderedCollections", "PrettyTables", "StatsBase"] [deps.ClimaTimeSteppers.extensions] @@ -277,15 +297,21 @@ version = "0.1.13" [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" +git-tree-sha1 = "7eee164f122511d3e4e1ebadb7956939ea7e1c77" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.3.5" +version = "1.3.6" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8" +git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.5" +version = "0.7.6" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "c785dfb1b3bfddd1da557e861b919819b82bbe5b" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.27.1" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -293,6 +319,16 @@ git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.11.5" +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" @@ -305,10 +341,10 @@ uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" version = "0.2.4" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.CommonWorldInvalidations]] git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" @@ -317,9 +353,9 @@ version = "1.0.0" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.15.0" +version = "4.16.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,17 +380,28 @@ git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" version = "0.2.3" +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.2" + [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" +git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.6" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.5.8" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + [[deps.CpuId]] deps = ["Markdown"] git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" @@ -367,10 +414,10 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.CubedSphere]] -deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"] -git-tree-sha1 = "10134667d7d3569b191a65801514271b8a93b292" +deps = ["TaylorSeries"] +git-tree-sha1 = "51bb25de518b4c62b7cdf26e5fbb84601bb27a60" uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb" -version = "0.2.5" +version = "0.3.0" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" @@ -378,10 +425,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "fb61b4812c49343d7ef0b533ba982c46021938a6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.7.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -398,11 +445,23 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fc173b380865f70627d7dd1190dc2fce6cc105af" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.14.10+0" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] +git-tree-sha1 = "697abdf4af0e38199e9eabff6ccdf65255de855d" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.5" +version = "6.159.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -414,6 +473,7 @@ version = "6.151.5" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" @@ -427,18 +487,15 @@ version = "6.151.5" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" +deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "b1f970a2873a2cf76ce35fb0ed2b755a11b31052" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.2" - - [deps.DiffEqCallbacks.weakdeps] - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" +version = "4.1.0" [[deps.DiffResults]] deps = ["StaticArraysCore"] @@ -453,10 +510,10 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[deps.DifferentiationInterface]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "c81579b549a00edf31582d318fec06523e0b607a" +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "0c99576d0b93df0aff1bed9d9adddef14e4e658f" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.9" +version = "0.6.22" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -466,10 +523,13 @@ version = "0.5.9" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = "ForwardDiff" + DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" DifferentiationInterfaceReverseDiffExt = "ReverseDiff" + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTapirExt = "Tapir" DifferentiationInterfaceTrackerExt = "Tracker" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] @@ -481,10 +541,13 @@ version = "0.5.9" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -492,6 +555,22 @@ version = "0.5.9" deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "3101c32aab536e7a27b1763c0797dba151b899ad" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.113" + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + + [deps.Distributions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" @@ -503,25 +582,32 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.Elliptic]] -git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608" -uuid = "b305315f-e792-5b7a-8f41-49f472929428" -version = "1.0.1" - [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "d445df66dd8761a4c27df950db89c6a3a0629fe7" +git-tree-sha1 = "e333ffd38ecffcf5c6c2dafd10788404ac46fb9f" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.7" +version = "0.8.6" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] AdaptExt = "Adapt" +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" @@ -539,17 +625,17 @@ git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" version = "0.8.5" -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.8.0" +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.2" -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] @@ -562,53 +648,48 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastLapackInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" -uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.4" +[[deps.FastPower]] +git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" +uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" +version = "1.1.1" + + [deps.FastPower.extensions] + FastPowerEnzymeExt = "Enzyme" + FastPowerForwardDiffExt = "ForwardDiff" + FastPowerMeasurementsExt = "Measurements" + FastPowerMonteCarloMeasurementsExt = "MonteCarloMeasurements" + FastPowerReverseDiffExt = "ReverseDiff" + FastPowerTrackerExt = "Tracker" + + [deps.FastPower.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" +git-tree-sha1 = "91e0e5c68d02bcdaae76d3c8ceb4361e8f28d2e9" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.3" +version = "1.16.5" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.11.0" +version = "1.13.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" - [deps.FillArrays.weakdeps] - PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" - -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" @@ -617,9 +698,9 @@ version = "0.8.5" [[deps.FlameGraphs]] deps = ["AbstractTrees", "Colors", "FileIO", "FixedPointNumbers", "IndirectArrays", "LeftChildRightSiblingTrees", "Profile"] -git-tree-sha1 = "bd1aaf448be998ea427b1c7213b8acf2e278498b" +git-tree-sha1 = "c8bb515422866a684d9e67870fc5791e3292ad01" uuid = "08572546-2f56-4bcf-ba4e-bab62c3a3f89" -version = "1.0.0" +version = "1.0.1" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] @@ -627,11 +708,16 @@ git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.96+0" +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" +version = "0.10.38" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -662,19 +748,25 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" +git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.11" +version = "0.4.12" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = "532f9126ad901533af1d4f5c198867227a7bb077" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.4.0+1" + [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a74c3f1cf56a3dfcdef0605f8cdb7015926aae30" +git-tree-sha1 = "62ee71528cca49be797076a76bdc654a170a523e" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.3.0" +version = "10.3.1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -683,10 +775,22 @@ uuid = "46192b85-c4d5-4398-a991-12ede77f4527" version = "0.1.6" [[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "ab29216184312f99ff957b32cd63c2fe9c928b91" +deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] +git-tree-sha1 = "1d6f290a5eb1201cd63574fbc4440c788d5cb38f" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.26.7" +version = "0.27.8" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ee28ddcd5517d54e417182fec3886e7412d3926f" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.8" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "f31929b9e67066bee48eec8b03c0df47d31a74b3" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.8+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -707,9 +811,9 @@ version = "0.1.0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +git-tree-sha1 = "674ff0db93fffcd11a3573986e550d66cd4fd71f" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.2+0" +version = "2.80.5+0" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -717,53 +821,56 @@ git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.14+0" -[[deps.Graphs]] -deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "ebd18c326fa6cee1efb7da9a3b45cf69da2ed4d9" -uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.11.2" - [[deps.Graphviz_jll]] deps = ["Artifacts", "Cairo_jll", "Expat_jll", "JLLWrappers", "Libdl", "Pango_jll", "Pkg"] git-tree-sha1 = "a5d45833dda71048117e8a9828bef75c03b18b1c" uuid = "3c863552-8265-54e4-a6dc-903eb78fde85" version = "2.50.0+1" +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] git-tree-sha1 = "e856eef26cf5bf2b0f95f8f4fc37553c72c8641c" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" version = "0.17.2" +weakdeps = ["MPI"] [deps.HDF5.extensions] MPIExt = "MPI" - [deps.HDF5.weakdeps] - MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" - [[deps.HDF5_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] -git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" -version = "1.14.3+3" +version = "1.14.2+1" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "1336e07ba2eb75614c99496501a8f4b233e9fafe" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.10" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "401e4f3f30f43af2c8478fc008da50096ea5240f" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HostCPUFeatures]] -deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293" -uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.17" +version = "8.3.1+0" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5e19e1e4fa3e71b774ce746274364aef0234634e" +git-tree-sha1 = "50aedf345a709ab75872f80a2779568dc0bb461b" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.11.1+0" +version = "2.11.2+1" + +[[deps.HypergeometricFunctions]] +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.25" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -775,11 +882,6 @@ git-tree-sha1 = "012e604e1c7458645cb8b436f8fba789a51b257f" uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" version = "1.0.0" -[[deps.Inflate]] -git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" -uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.5" - [[deps.InlineStrings]] git-tree-sha1 = "45521d31238e87ee9f9732561bfee12d4eebd52d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" @@ -793,12 +895,6 @@ version = "1.4.2" ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "14eb2b542e748570b56446f4c50fbfb2306ebc45" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.2.0+0" - [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" @@ -815,14 +911,14 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "18c59411ece4838b18cd7f537e56cf5e41ce5bfd" +git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.15" -weakdeps = ["Dates"] +version = "0.1.17" +weakdeps = ["Dates", "Test"] [deps.InverseFunctions.extensions] - DatesExt = "Dates" + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" @@ -840,16 +936,36 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JET]] -deps = ["InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Revise", "Test"] -git-tree-sha1 = "6ff76fc594051832ce91078686bc0d3def6d42c5" +deps = ["CodeTracking", "InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Test"] +git-tree-sha1 = "5c5ac91e775b585864015c5c1703cee283071a47" uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" -version = "0.8.29" +version = "0.9.12" + + [deps.JET.extensions] + JETCthulhuExt = "Cthulhu" + ReviseExt = "Revise" + + [deps.JET.weakdeps] + Cthulhu = "f68482b8-f384-11e8-15f7-abe071a5a75f" + Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" + +[[deps.JLD2]] +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] +git-tree-sha1 = "ce5737c0d4490b0e0040b5dc77fbb6a351ddf188" +uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" +version = "0.5.8" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "39d64b09147620f5ffbf6b2d3255be3c901bec63" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.8" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "be3dc50a92e5a386872a493a10050136d4703f9b" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.6.1" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -857,11 +973,17 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.4+0" + [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "5d3a5a206297af3868151bb4a2cf27ebce46f16d" +git-tree-sha1 = "2984284a8abcfcc4784d95a9e2ea4e352dd8ede7" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.33" +version = "0.9.36" [[deps.JuliaNVTXCallbacks_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -869,43 +991,53 @@ git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f" uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" version = "0.2.1+0" -[[deps.KLU]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" -uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" - [[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec" +deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "e73a077abc7fe798fe940deabe30ef6c66bdde52" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.22" -weakdeps = ["EnzymeCore"] +version = "0.9.29" +weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" + LinearAlgebraExt = "LinearAlgebra" + SparseArraysExt = "SparseArrays" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "267dad6b4b7b5d529c76d40ff48d33f7e94cb834" +git-tree-sha1 = "4f20a2df85a9e5d55c9e84634bbf808ed038cabd" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.6" +version = "0.9.8" [[deps.KrylovKit]] -deps = ["GPUArraysCore", "LinearAlgebra", "PackageExtensionCompat", "Printf", "VectorInterface"] -git-tree-sha1 = "3c2a016489c38f35160a246c91a3f3353c47bb68" +deps = ["GPUArraysCore", "LinearAlgebra", "PackageExtensionCompat", "Printf", "Random", "VectorInterface"] +git-tree-sha1 = "3ba86a12066c19a6ed0bc963984bcf89d495133e" uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" -version = "0.8.1" -weakdeps = ["ChainRulesCore"] +version = "0.8.2" [deps.KrylovKit.extensions] KrylovKitChainRulesCoreExt = "ChainRulesCore" + [deps.KrylovKit.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "36bdbc52f13a7d1dcb0f3cd694e01677a515655b" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "4.0.0+0" + [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "020abd49586480c1be84f57da0017b5d3db73f7c" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "d422dfd9707bec6617335dc2ea3c5172a87d5908" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "8.0.0" +version = "9.1.3" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -913,9 +1045,9 @@ weakdeps = ["BFloat16s"] [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "c2636c264861edc6d305e6b4d528f09566d24c5e" +git-tree-sha1 = "05a8bd5a42309a9ec82f700876903abce1017dd3" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.30+0" +version = "0.0.34+0" [[deps.LLVMLoopInfo]] git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea" @@ -924,20 +1056,36 @@ version = "1.0.0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" +version = "18.1.7+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.2+0" +version = "2.10.2+1" [[deps.LaTeXStrings]] -git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.1" +version = "1.4.0" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.5" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SparseArraysExt = "SparseArrays" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] @@ -945,24 +1093,6 @@ git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.17" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "b8ea0abe6cc872996e87356951d286d25d485aba" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.1.9" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1008,21 +1138,27 @@ version = "3.2.2+1" [[deps.Libgcrypt_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] -git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +git-tree-sha1 = "8be878062e0ffa2c3f67bb58a595375eda5de80b" uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.11+0" +version = "1.11.0+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" [[deps.Libgpg_error_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +git-tree-sha1 = "c6ce1e19f3aec9b59186bdf06cdf3c4fc5f5f3e6" uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.49.0+0" +version = "1.50.0+0" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +git-tree-sha1 = "61dfdba58e585066d8bce214c5a51eaa0539f269" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" +version = "1.17.0+1" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1030,27 +1166,27 @@ git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" version = "2.40.1+0" +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "b404131d06f7886402758c9ce2214b636eb4d54a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.7.0+0" + [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.40.1+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] deps = ["FastClosures", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "ae5d90280094348c32fda8bc8b5a88bb16514d43" +git-tree-sha1 = "f55281226cdae8edea2c850fda88d8f5a03485b6" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.8.0" +version = "2.9.0" [deps.LinearOperators.extensions] LinearOperatorsCUDAExt = "CUDA" @@ -1062,43 +1198,6 @@ version = "2.8.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" -[[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "CpuId", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "1ec185f0d722d9b87c9bf073372898a1c7810156" -uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.31.0" - - [deps.LinearSolve.extensions] - LinearSolveBandedMatricesExt = "BandedMatrices" - LinearSolveBlockDiagonalsExt = "BlockDiagonals" - LinearSolveCUDAExt = "CUDA" - LinearSolveCUDSSExt = "CUDSS" - LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] - LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] - LinearSolveHYPREExt = "HYPRE" - LinearSolveIterativeSolversExt = "IterativeSolvers" - LinearSolveKernelAbstractionsExt = "KernelAbstractions" - LinearSolveKrylovKitExt = "KrylovKit" - LinearSolveMetalExt = "Metal" - LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" - - [deps.LinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" - HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" - IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" - KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" - KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" - [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea" @@ -1118,39 +1217,42 @@ version = "0.3.28" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" -[[deps.LoopVectorization]] -deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "8084c25a250e00ae427a379a5b607e7aed96a2dd" -uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.171" -weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] - - [deps.LoopVectorization.extensions] - ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] - SpecialFunctionsExt = "SpecialFunctions" +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.1.0" [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] -git-tree-sha1 = "0b8cf121228f7dae022700c1c11ac1f04122f384" +git-tree-sha1 = "260dc274c1bc2cb839e758588c63d9c8b5e639d1" uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" -version = "2.3.2" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.2.0+0" +version = "3.0.5" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" version = "0.4.17" +[[deps.MPI]] +deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] +git-tree-sha1 = "892676019c58f34e38743bc989b0eca5bce5edc5" +uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" +version = "0.20.22" + + [deps.MPI.extensions] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + + [deps.MPI.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "19d4bd098928a3263693991500d05d74dbdc2004" +git-tree-sha1 = "7715e65c47ba3941c502bffb7f266a41a7f54423" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.2.2+0" +version = "4.2.3+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1160,9 +1262,9 @@ version = "0.1.11" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8c35d5420193841b2f367e658540e8d9e0601ed0" +git-tree-sha1 = "70e830dab5d0775183c99fc75e4c24c614ed7142" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.4.0+0" +version = "5.5.1+0" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1179,17 +1281,22 @@ version = "0.1.8" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" -[[deps.MaybeInplace]] -deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "1b9e613f2ca3b6cdcbfe36381e17ca2b66d4b3a1" -uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" -version = "0.1.3" +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" version = "2.28.2+1" +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01" @@ -1215,20 +1322,14 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultiBroadcastFusion]] -git-tree-sha1 = "19b2f184b5882538bee0d5355b152212110e0fd2" +git-tree-sha1 = "4157ffb36526a275f644a3fbe378850e5eb1b470" uuid = "c3c07f87-98de-43f2-a76f-835b330b2cbb" -version = "0.3.1" +version = "0.3.3" weakdeps = ["Adapt", "CUDA"] [deps.MultiBroadcastFusion.extensions] MultiBroadcastFusionCUDAExt = ["CUDA", "Adapt"] -[[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" - [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" @@ -1251,46 +1352,17 @@ version = "1.0.2" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" -[[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "3adb1e5945b5a6b1eaee754077f25ccc402edd7f" -uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.13.1" - - [deps.NonlinearSolve.extensions] - NonlinearSolveBandedMatricesExt = "BandedMatrices" - NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" - NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" - NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" - NonlinearSolveMINPACKExt = "MINPACK" - NonlinearSolveNLSolversExt = "NLSolvers" - NonlinearSolveNLsolveExt = "NLsolve" - NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" - NonlinearSolveSpeedMappingExt = "SpeedMapping" - NonlinearSolveSymbolicsExt = "Symbolics" - NonlinearSolveZygoteExt = "Zygote" - - [deps.NonlinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" - FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" - LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" - MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" - NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" - NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" - SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" - SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.OffsetArrays]] -git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.14.1" -weakdeps = ["Adapt"] +[[deps.ODEConvergenceTester]] +deps = ["LinearAlgebra", "Logging", "SciMLBase"] +git-tree-sha1 = "95a30bbbdaf3e08e05ee48ed510e2784f2372ccc" +uuid = "42a5c2e1-f365-4540-8ca5-3684de3ecd95" +version = "0.2.2" - [deps.OffsetArrays.extensions] - OffsetArraysAdaptExt = "Adapt" +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] @@ -1303,16 +1375,22 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.1+2" [[deps.OpenMPI_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] +git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "4.1.6+0" +version = "5.0.5+0" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a028ee3cb5641cccc4c24e90c36b0a4f7707bdf5" +git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.14+0" +version = "3.0.15+1" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1320,6 +1398,12 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6703a85cb3781bd5909d48730a67205f3f31a575" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.3+0" + [[deps.OrderedCollections]] git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" @@ -1330,11 +1414,17 @@ deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" version = "10.42.0+1" +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + [[deps.PProf]] deps = ["AbstractTrees", "CodecZlib", "EnumX", "FlameGraphs", "Libdl", "OrderedCollections", "Profile", "ProgressMeter", "ProtoBuf", "pprof_jll"] -git-tree-sha1 = "c909f647881a80ec4c5974eec9624b0c96afad9d" +git-tree-sha1 = "e95c9b25cc4b266edb7295c3ee224d857cc93335" uuid = "e4faabce-9ead-11e9-39d9-4379958e3056" -version = "3.1.0" +version = "3.1.3" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -1344,9 +1434,9 @@ weakdeps = ["Requires", "TOML"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cb5a2ab6763464ae0f19c86c56c63d4a2b0f5bda" +git-tree-sha1 = "e127b609fb9ecba6f201ba7ab753d5a605d53801" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.52.2+0" +version = "1.54.1+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1360,6 +1450,11 @@ git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" version = "2.8.1" +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" @@ -1377,11 +1472,43 @@ git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da" uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" version = "0.3.3" +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "41031ef3a1be6f5bbbf3e8073f210556daeae5ca" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.3.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] +git-tree-sha1 = "3ca9a356cd2e113c420f2c13bea19f8d3fb1cb18" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.3" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "dae01f8c2e069a683d3a6e17bbae5070ab94786f" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.9" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "9ff799e8fb8ed6717710feee3be3bc20645daa97" +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "6d38fea02d983051776a856b7df75b30cf9a3c1f" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.15" +version = "0.7.16" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1397,9 +1524,9 @@ version = "1.4.3" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "406c29a7f46706d379a3bce45671b4e3a39ddfbc" +git-tree-sha1 = "6c62ce45f268f3f958821a1e5192cf91c75ae89c" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.22" +version = "0.4.24" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1421,9 +1548,9 @@ version = "1.4.3" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "66b20dd35966a748321d3b2537c4584cf40387c7" +git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.3.2" +version = "2.4.0" [[deps.Printf]] deps = ["Unicode"] @@ -1439,12 +1566,6 @@ git-tree-sha1 = "e42571ce9a614c2fbebcaa8aab23bbf8865c624e" uuid = "efd6af41-a80b-495e-886c-e51b0c7d77a3" version = "0.1.6" -[[deps.ProgressBars]] -deps = ["Printf"] -git-tree-sha1 = "b437cdb0385ed38312d91d9c00c20f3798b30256" -uuid = "49802e3a-d2f1-5c88-81d8-b72133a6f568" -version = "1.5.1" - [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" @@ -1452,10 +1573,51 @@ uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.2" [[deps.ProtoBuf]] -deps = ["BufferedStreams", "Dates", "EnumX", "TOML", "TranscodingStreams"] -git-tree-sha1 = "f2bfddd629ba7a53ed789d6427d64e0e4c378ef8" +deps = ["BufferedStreams", "Dates", "EnumX", "TOML"] +git-tree-sha1 = "a94945b7faff91d6feba4b6e0fc95e5c44eb5a67" uuid = "3349acd9-ac6a-5e09-bcdb-63829b23a429" -version = "1.0.15" +version = "1.0.16" + +[[deps.PtrArrays]] +git-tree-sha1 = "77a42d78b6a92df47ab37e177b2deac405e1c88f" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.2.1" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "492601870742dcd38f233b23c3ec629628c1d724" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.7.1+1" + +[[deps.Qt6Declarative_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] +git-tree-sha1 = "e5dd466bf2569fe08c91a2cc29c1003f4797ac3b" +uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" +version = "6.7.1+2" + +[[deps.Qt6ShaderTools_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "1a180aeced866700d4bebc3120ea1451201f16bc" +uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" +version = "6.7.1+1" + +[[deps.Qt6Wayland_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] +git-tree-sha1 = "729927532d48cf79f49070341e1d918a65aba6b0" +uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" +version = "6.7.1+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.11.1" + + [deps.QuadGK.extensions] + QuadGKEnzymeExt = "Enzyme" + + [deps.QuadGK.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1472,10 +1634,10 @@ uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.7.0" [[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +deps = ["Random"] +git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" +version = "1.6.0" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1483,11 +1645,17 @@ git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "b450d967a770fb13d0e26358f58375e20361cf9c" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "6f4dca5fd8e97087a76b7ab8384d1c3086ace0b7" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.26.0" +version = "3.27.3" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1495,6 +1663,7 @@ version = "3.26.0" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -1504,31 +1673,38 @@ version = "3.26.0" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -[[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" -uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.23" - [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" -[[deps.Revise]] -deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"] -git-tree-sha1 = "85ddd93ea15dcd8493400600e09104a9e94bb18d" -uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" -version = "3.5.15" +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.8.0" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.5.1+0" [[deps.RootSolvers]] deps = ["ForwardDiff"] @@ -1551,17 +1727,16 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" -[[deps.SLEEFPirates]] -deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "456f610ca2fbd1c14f5fcf31c6bfadc55e7d66e0" -uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.43" +[[deps.SafeTestsets]] +git-tree-sha1 = "81ec49d645af090901120a1542e67ecbbe044db3" +uuid = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f" +version = "0.1.0" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "380a059a9fd18a56d98e50ed98d40e1c1202e662" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "f9195449e0ae7e8daf9d609c9619ecfc2369f62c" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.46.0" +version = "2.60.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1583,16 +1758,21 @@ version = "2.46.0" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] -git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "6149620767866d4b0f0f7028639b6e661b6a1e44" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.8" +version = "0.3.12" +weakdeps = ["SparseArrays", "StaticArraysCore"] + + [deps.SciMLOperators.extensions] + SciMLOperatorsSparseArraysExt = "SparseArrays" + SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "cfdd1200d150df1d3c055cc72ee6850742e982d7" +git-tree-sha1 = "25514a6f200219cd1073e4ff23a6324e4a7efe64" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.4.1" +version = "1.5.0" [[deps.Scratch]] deps = ["Dates"] @@ -1602,9 +1782,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "ff11acffdb082493657550959d4feb4b6149e73a" +git-tree-sha1 = "d0553ce4031a081cc42387a9b9c8441b7d99f32d" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.5" +version = "1.4.7" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1615,33 +1795,16 @@ git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" version = "1.1.1" -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.SimpleNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "03c21a4c373c7c3aa77611430068badaa073d740" -uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.11.0" - - [deps.SimpleNonlinearSolve.extensions] - SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" - SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" - SimpleNonlinearSolveTrackerExt = "Tracker" - SimpleNonlinearSolveZygoteExt = "Zygote" - - [deps.SimpleNonlinearSolve.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" -[[deps.SimpleTraits]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" -uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" +[[deps.SimpleBufferStream]] +git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.2.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" @@ -1657,48 +1820,24 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.10.0" -[[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" -uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.19.0" - - [deps.SparseDiffTools.extensions] - SparseDiffToolsEnzymeExt = "Enzyme" - SparseDiffToolsPolyesterExt = "Polyester" - SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" - SparseDiffToolsSymbolicsExt = "Symbolics" - SparseDiffToolsZygoteExt = "Zygote" - - [deps.SparseDiffTools.weakdeps] - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SparseMatrixColorings]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "ad048e784b816e4de5553a13f1daf148412f3dbd" -uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.6" - -[[deps.Sparspak]] -deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" -uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.9" - [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.4.0" -weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + [deps.SpecialFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + +[[deps.StableRNGs]] +deps = ["Random"] +git-tree-sha1 = "83e6cce8324d49dfaf9ef059227f91ed4441a8e5" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.2" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" @@ -1706,27 +1845,33 @@ uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" version = "1.1.1" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "8963e5a083c837531298fc41599182a759a87a6d" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] +git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.1" -weakdeps = ["OffsetArrays", "StaticArrays"] +version = "1.8.0" [deps.StaticArrayInterface.extensions] StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" StaticArrayInterfaceStaticArraysExt = "StaticArrays" + [deps.StaticArrayInterface.weakdeps] + OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "eeafab08ae20c62c44c8399ccb9354a04b80db50" +git-tree-sha1 = "777657803913ffc7e8cc20f0fd04b634f871af8f" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.7" -weakdeps = ["ChainRulesCore", "Statistics"] +version = "1.9.8" [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" + [deps.StaticArrays.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + [[deps.StaticArraysCore]] git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" @@ -1749,6 +1894,20 @@ git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.3" +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.2" + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + + [deps.StatsFuns.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" @@ -1757,9 +1916,9 @@ version = "0.5.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" +version = "0.4.0" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1772,9 +1931,9 @@ version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "9c490ee01823dc443da25bf9225827e3cdd2d7e9" +git-tree-sha1 = "6c6761e08bf5a270905cdd065be633abfa1b155b" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.26" +version = "0.3.35" [[deps.TOML]] deps = ["Dates"] @@ -1800,15 +1959,23 @@ version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] -git-tree-sha1 = "1c7170668366821b0c4c4fe03ee78f8d6cf36e2c" +git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" -version = "0.16.0" +version = "0.17.3" [deps.TaylorSeries.extensions] TaylorSeriesIAExt = "IntervalArithmetic" + TaylorSeriesSAExt = "StaticArrays" [deps.TaylorSeries.weakdeps] IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] @@ -1827,29 +1994,19 @@ version = "0.5.2" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" +git-tree-sha1 = "3a6f063d690135f5c1ba351412c82bae4d1402bf" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.24" +version = "0.5.25" [[deps.TranscodingStreams]] -git-tree-sha1 = "d73336d81cafdc277ff45558bb7eaa2b04a8e472" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.10" -weakdeps = ["Random", "Test"] +version = "0.11.3" - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] - -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "be986ad9dac14888ba338c2554dcfec6939e1393" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.2.1" - -[[deps.Tricks]] -git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.9" +[[deps.TriplotBase]] +git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" +uuid = "981d1d27-644d-49a2-9326-4793e63143c3" +version = "0.1.0" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -1874,6 +2031,29 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "d95fe458f26209c66a187b1114df96fd70839efd" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.21.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.4" + [[deps.Unrolled]] deps = ["MacroTools"] git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" @@ -1887,33 +2067,44 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5" +git-tree-sha1 = "2d17fabcd17e67d7625ce9c531fb9f40b7c42ce4" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.5" +version = "0.2.1" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" +git-tree-sha1 = "cea8abaa6e43f72f97a09cf95b80c9eb53ff75cf" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.6" - -[[deps.VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "e7f5b81c65eb858bed630fe006837b935518aca5" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.70" - -[[deps.VertexSafeGraphs]] -deps = ["Graphs"] -git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" -uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.2.0" +version = "0.4.9" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "d9717ce3518dc68a99e6b96300813760d887a01d" +git-tree-sha1 = "6a451c6f33a176150f315726eba8b92fbfdb9ae7" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.1+0" +version = "2.13.4+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] @@ -1921,6 +2112,24 @@ git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" version = "1.1.41+0" +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "15e637a697345f6743674f1322beefbc5dcd5cfc" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.6.3+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" @@ -1933,6 +2142,12 @@ git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" version = "1.0.11+0" +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + [[deps.Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" @@ -1945,6 +2160,30 @@ git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" version = "1.3.6+0" +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" @@ -1963,6 +2202,60 @@ git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" version = "1.17.0+0" +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" @@ -1974,34 +2267,106 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.2.13+1" +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+1" + +[[deps.demumble_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6498e3581023f8e530f34760d18f75a69e3a4ea8" +uuid = "1e29f10c-031c-5a83-9565-69cddfc27673" +version = "1.3.0+0" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "936081b536ae4aa65415d869287d43ef3cb576b2" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.53.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + [[deps.libaec_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" version = "1.1.2+0" +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.9.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.2+0" + [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+1" +version = "5.11.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.3+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.43+1" +version = "1.6.44+0" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+2" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" version = "1.52.0+1" -[[deps.oneTBB_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" -uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2021.12.0+0" - [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" @@ -2012,3 +2377,21 @@ deps = ["Artifacts", "Graphviz_jll", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "b004c9fd6294afe24efccc7e2f055436b63cb809" uuid = "cf2c5f97-e748-59fa-a03f-dda3c62118cb" version = "1.0.1+0" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/perf/Project.toml b/.buildkite/Project.toml similarity index 61% rename from perf/Project.toml rename to .buildkite/Project.toml index ef0e1d1b..ec248690 100644 --- a/perf/Project.toml +++ b/.buildkite/Project.toml @@ -1,49 +1,71 @@ [deps] +Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595" ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" ClimaCore = "d414da3d-4745-48bb-8d80-42e94e092884" +ClimaCorePlots = "cf7c7e5a-b407-4c48-9047-11a94a308626" ClimaTimeSteppers = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" +JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" +LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" LinearOperators = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -NVTX = "5da4648a-3479-48b8-97b9-01cb529c0a1f" +MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" +ODEConvergenceTester = "42a5c2e1-f365-4540-8ca5-3684de3ecd95" OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" PProf = "e4faabce-9ead-11e9-39d9-4379958e3056" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" Profile = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" ProfileCanvas = "efd6af41-a80b-495e-886c-e51b0c7d77a3" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f" SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" -URIs = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" [compat] +Aqua = "0.8" ArgParse = "1" BenchmarkTools = "1" -ClimaCore = "0.10, 0.11, 0.12, 0.13, 0.14" +CUDA = "5" +ClimaComms = "0.6" +ClimaCore = "0.14" +ClimaCorePlots = "0.2" ClimaTimeSteppers = "0.7" DataStructures = "0.18" DiffEqBase = "6" -DiffEqCallbacks = "2, 3" -JET = "0.7, 0.8" +DiffEqCallbacks = "4" +Distributions = "0.25" +FileIO = "1" +JET = "0.8, 0.9" +JLD2 = "0.5" JSON = "0.21" -KernelAbstractions = "0.7, 0.8, 0.9" -Krylov = "0.8, 0.9" +KernelAbstractions = "0.9" +Krylov = "0.9" +LaTeXStrings = "1" LinearOperators = "2" -PProf = "2, 3" +MPI = "0.20" +ODEConvergenceTester = "0.2" +OrderedCollections = "1" +PProf = "3" +Plots = "1" +PrettyTables = "2" ProfileCanvas = "0.1" -SciMLBase = "1, 2" +SafeTestsets = "0.1" +SciMLBase = "2" StaticArrays = "1" -URIs = "1" +StatsBase = "0.34" julia = "1.8" diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index 1ece1f6a..5eeab51b 100644 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -1,8 +1,7 @@ agents: queue: new-central slurm_mem: 8G - modules: climacommon/2024_05_27 - partition: expansion + modules: climacommon/2024_10_08 env: JULIA_LOAD_PATH: "${JULIA_LOAD_PATH}:${BUILDKITE_BUILD_CHECKOUT_PATH}/.buildkite" @@ -16,14 +15,8 @@ steps: key: "init_cpu_env" command: - - echo "--- Instantiate test" - - "julia --project=test -e 'using Pkg; Pkg.develop(path=\".\"); Pkg.instantiate(;verbose=true); Pkg.precompile(;strict=true)'" - - - echo "--- Instantiate docs" - - "julia --project=docs -e 'using Pkg; Pkg.develop(path=\".\"); Pkg.instantiate(;verbose=true); Pkg.precompile(;strict=true)'" - - - echo "--- Instantiate perf" - - "julia --project=perf -e 'using Pkg; Pkg.instantiate(;verbose=true); Pkg.precompile(;strict=true)'" + - echo "--- Instantiate buildkite" + - "julia --project=.buildkite -e 'using Pkg; Pkg.instantiate(;verbose=true); Pkg.precompile(;strict=true)'" - echo "--- Package status" - "julia --project -e 'using Pkg; Pkg.status()'" @@ -39,7 +32,7 @@ steps: # - "julia --project -e 'using Pkg; Pkg.instantiate(;verbose=true); Pkg.precompile(;strict=true)'" # - echo "--- Instantiate test" - # - "julia --project=test -e 'using Pkg; Pkg.develop(path=\".\"); Pkg.instantiate(;verbose=true); Pkg.precompile()'" + # - "julia --project=.buildkite -e 'using Pkg; Pkg.develop(path=\".\"); Pkg.instantiate(;verbose=true); Pkg.precompile()'" # - echo "--- Initialize CUDA runtime" # - "julia --project -e 'using CUDA; CUDA.precompile_runtime(); CUDA.versioninfo()'" @@ -54,62 +47,68 @@ steps: steps: - label: "unit: sparse_containers" - command: "julia --project=test --check-bounds=yes test/sparse_containers.jl" + command: "julia --project=.buildkite --check-bounds=yes test/sparse_containers.jl" artifact_paths: "output/*" - label: "unit: fused_increment" - command: "julia --project=test --check-bounds=yes test/fused_increment.jl" + command: "julia --project=.buildkite --check-bounds=yes test/fused_increment.jl" artifact_paths: "output/*" - label: "unit: test_newtons_method" - command: "julia --project=test --check-bounds=yes test/test_newtons_method.jl" + command: "julia --project=.buildkite --check-bounds=yes test/test_newtons_method.jl" artifact_paths: "output/*" - label: "unit: single_column_ARS_test" - command: "julia --project=test --check-bounds=yes test/single_column_ARS_test.jl" + command: "julia --project=.buildkite --check-bounds=yes test/single_column_ARS_test.jl" + artifact_paths: "output/*" + + - label: "unit: callbacks" + command: "julia --project=.buildkite --check-bounds=yes test/callbacks.jl" artifact_paths: "output/*" - label: "unit: callbacks" - command: "julia --project=test --check-bounds=yes test/callbacks.jl" + command: "julia --project=.buildkite --check-bounds=yes test/callbacks.jl" artifact_paths: "output/*" + env: + CLIMACOMMS_CONTEXT: "MPI" - label: "unit: aqua" - command: "julia --project=test --check-bounds=yes test/aqua.jl" + command: "julia --project=.buildkite --check-bounds=yes test/aqua.jl" artifact_paths: "output/*" - label: "unit: integrator" - command: "julia --project=test --check-bounds=yes test/integrator.jl" + command: "julia --project=.buildkite --check-bounds=yes test/integrator.jl" artifact_paths: "output/*" - label: "unit: test_convergence_checker" - command: "julia --project=test --check-bounds=yes test/test_convergence_checker.jl" + command: "julia --project=.buildkite --check-bounds=yes test/test_convergence_checker.jl" artifact_paths: "output/*" - group: "Test convergence" steps: - label: "conv: lsrk" - command: "julia --project=test --check-bounds=yes test/convergence_lsrk.jl" + command: "julia --project=.buildkite --check-bounds=yes test/convergence_lsrk.jl" - group: "Tabulate convergence" steps: - label: "conv: tabulate_convergence_orders_multirate" - command: "julia --project=test --check-bounds=yes test/tabulate_convergence_orders_multirate.jl" + command: "julia --project=.buildkite --check-bounds=yes test/tabulate_convergence_orders_multirate.jl" - label: "conv: tabulate_convergence_orders_rosenbrock" - command: "julia --project=test --check-bounds=yes test/tabulate_convergence_orders_rosenbrock.jl" + command: "julia --project=.buildkite --check-bounds=yes test/tabulate_convergence_orders_rosenbrock.jl" - label: "conv: tabulate_convergence_orders_imex_ssp" - command: "julia --project=test --check-bounds=yes test/tabulate_convergence_orders_imex_ssp.jl" + command: "julia --project=.buildkite --check-bounds=yes test/tabulate_convergence_orders_imex_ssp.jl" - label: "conv: tabulate_convergence_orders_imex_ark" - command: "julia --project=test --check-bounds=yes test/tabulate_convergence_orders_imex_ark.jl" + command: "julia --project=.buildkite --check-bounds=yes test/tabulate_convergence_orders_imex_ark.jl" # - label: "GPU tests" # command: - # - "julia --project=test --check-bounds=yes test/runtests.jl CuArray" + # - "julia --project=.buildkite --check-bounds=yes test/runtests.jl CuArray" # artifact_paths: "output/*" # slurm_gres: "gpu:1" @@ -117,156 +116,156 @@ steps: steps: - label: "Perf: Flame graph (1D diffusion)" - command: "julia --project=perf perf/flame.jl --job_id diffusion_1D" + command: "julia --project=.buildkite perf/flame.jl --job_id diffusion_1D" artifact_paths: "diffusion_1D/*" - label: "Perf: Jet graph (ode fun)" - command: "julia --project=perf perf/jet.jl --problem ode_fun" + command: "julia --project=.buildkite perf/jet.jl --problem ode_fun" - label: "Perf: Jet (forward euler)" - command: "julia --project=perf perf/jet.jl --problem fe" + command: "julia --project=.buildkite perf/jet.jl --problem fe" - label: "Perf: Jet (clima diffusion 2D)" - command: "julia --project=perf perf/jet.jl --problem diffusion2d" + command: "julia --project=.buildkite perf/jet.jl --problem diffusion2d" - label: "Perf: Benchmark" - command: "julia --project=perf perf/benchmark.jl" + command: "julia --project=.buildkite perf/benchmark.jl" - group: "Limiters analysis" steps: - label: "Limiters analysis: SSP333_LT_HT" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/limiter_analysis.jl --alg SSP333 --use_limiter true --use_hyperdiffusion true" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/limiter_analysis.jl --alg SSP333 --use_limiter true --use_hyperdiffusion true" - label: "Limiters analysis: ARS343_LT_HT" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/limiter_analysis.jl --alg ARS343 --use_limiter true --use_hyperdiffusion true" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/limiter_analysis.jl --alg ARS343 --use_limiter true --use_hyperdiffusion true" - label: "Limiters analysis: SSP333_LF_HT" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/limiter_analysis.jl --alg SSP333 --use_limiter false --use_hyperdiffusion true" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/limiter_analysis.jl --alg SSP333 --use_limiter false --use_hyperdiffusion true" - label: "Limiters analysis: ARS343_LF_HT" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/limiter_analysis.jl --alg ARS343 --use_limiter false --use_hyperdiffusion true" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/limiter_analysis.jl --alg ARS343 --use_limiter false --use_hyperdiffusion true" - label: "Limiters analysis: SSP333_LT_HF" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/limiter_analysis.jl --alg SSP333 --use_limiter true --use_hyperdiffusion false" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/limiter_analysis.jl --alg SSP333 --use_limiter true --use_hyperdiffusion false" - label: "Limiters analysis: ARS343_LT_HF" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/limiter_analysis.jl --alg ARS343 --use_limiter true --use_hyperdiffusion false" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/limiter_analysis.jl --alg ARS343 --use_limiter true --use_hyperdiffusion false" - label: "Limiters analysis: SSP333_LF_HF" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/limiter_analysis.jl --alg SSP333 --use_limiter false --use_hyperdiffusion false" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/limiter_analysis.jl --alg SSP333 --use_limiter false --use_hyperdiffusion false" - label: "Limiters analysis: ARS343_LF_HF" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/limiter_analysis.jl --alg ARS343 --use_limiter false --use_hyperdiffusion false" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/limiter_analysis.jl --alg ARS343 --use_limiter false --use_hyperdiffusion false" - group: "Convergence" steps: - label: "Convergence: SSP22Heuns" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg SSP22Heuns" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg SSP22Heuns" soft_fail: true - label: "Convergence: SSP33ShuOsher" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg SSP33ShuOsher" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg SSP33ShuOsher" - label: "Convergence: RK4" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg RK4" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg RK4" - label: "Convergence: ARK2GKC" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg ARK2GKC" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg ARK2GKC" - label: "Convergence: ARS111" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg ARS111" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg ARS111" - label: "Convergence: ARS121" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg ARS121" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg ARS121" - label: "Convergence: ARS122" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg ARS122" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg ARS122" - label: "Convergence: ARS222" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg ARS222" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg ARS222" - label: "Convergence: ARS232" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg ARS232" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg ARS232" - label: "Convergence: ARS233" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg ARS233" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg ARS233" - label: "Convergence: ARS343" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg ARS343" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg ARS343" - label: "Convergence: ARS443" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg ARS443" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg ARS443" - label: "Convergence: SSP222" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg SSP222" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg SSP222" soft_fail: true - label: "Convergence: SSP322" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg SSP322" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg SSP322" - label: "Convergence: SSP332" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg SSP332" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg SSP332" - label: "Convergence: SSP333" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg SSP333" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg SSP333" - label: "Convergence: SSP433" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg SSP433" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg SSP433" - label: "Convergence: DBM453" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg DBM453" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg DBM453" - label: "Convergence: HOMMEM1" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg HOMMEM1" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg HOMMEM1" - label: "Convergence: IMKG232a" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG232a" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG232a" - label: "Convergence: IMKG232b" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG232b" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG232b" - label: "Convergence: IMKG242a" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG242a" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG242a" soft_fail: true - label: "Convergence: IMKG242b" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG242b" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG242b" - label: "Convergence: IMKG243a" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG243a" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG243a" - label: "Convergence: IMKG252a" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG252a" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG252a" - label: "Convergence: IMKG252b" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG252b" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG252b" - label: "Convergence: IMKG253a" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG253a" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG253a" - label: "Convergence: IMKG253b" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG253b" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG253b" - label: "Convergence: IMKG254a" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG254a" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG254a" - label: "Convergence: IMKG254b" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG254b" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG254b" - label: "Convergence: IMKG254c" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG254c" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG254c" - label: "Convergence: IMKG342a" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG342a" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG342a" - label: "Convergence: IMKG343a" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg IMKG343a" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg IMKG343a" - label: "Convergence: SSPKnoth" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/report_gen_alg.jl --alg SSPKnoth" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/report_gen_alg.jl --alg SSPKnoth" - wait @@ -274,9 +273,9 @@ steps: steps: - label: "Summarize convergence" - command: "julia --color=yes --check-bounds=yes --project=docs docs/src/dev/summarize_convergence.jl" + command: "julia --color=yes --check-bounds=yes --project=.buildkite docs/src/dev/summarize_convergence.jl" artifact_paths: "output/*" - label: "Summarize limiter analysis" - command: "julia --color=yes --project=docs docs/src/dev/limiter_summary.jl" + command: "julia --color=yes --project=.buildkite docs/src/dev/limiter_summary.jl" artifact_paths: "output/*" diff --git a/.dev/Manifest.toml b/.dev/Manifest.toml index 698a4283..f199b30d 100644 --- a/.dev/Manifest.toml +++ b/.dev/Manifest.toml @@ -1,16 +1,9 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.4" +julia_version = "1.10.6" manifest_format = "2.0" project_hash = "b280bcf3b481823c97fa1a62c1b5e65114b8fa18" -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -21,16 +14,16 @@ uuid = "00ebfdb7-1f24-5e51-bd34-a7502290713f" version = "3.4.3" [[deps.CommonMark]] -deps = ["Crayons", "JSON", "PrecompileTools", "URIs"] -git-tree-sha1 = "532c4185d3c9037c0237546d817858b23cf9e071" +deps = ["Crayons", "PrecompileTools"] +git-tree-sha1 = "3faae67b8899797592335832fccf4b3c80bb04fa" uuid = "a80b9123-70ca-4bc0-993e-6e3bcb318db6" -version = "0.8.12" +version = "0.8.15" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.15.0" +version = "4.16.0" [deps.Compat.extensions] CompatLinearAlgebraExt = "LinearAlgebra" @@ -54,14 +47,6 @@ version = "0.18.20" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - [[deps.Glob]] git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" @@ -71,84 +56,21 @@ version = "1.3.1" deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - [[deps.JuliaFormatter]] -deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"] -git-tree-sha1 = "4b0b04fe63e02eed776181e14ebc1f48d787ceec" +deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "PrecompileTools", "TOML", "Tokenize"] +git-tree-sha1 = "59cf7ad64f1b0708a4fa4369879d33bad3239b56" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.59" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.4" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibGit2_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] -uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.0+1" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.0.62" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - [[deps.OrderedCollections]] git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.1" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" - [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" @@ -165,10 +87,6 @@ version = "1.4.3" deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" @@ -177,50 +95,19 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" version = "1.0.3" -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - [[deps.Tokenize]] git-tree-sha1 = "468b4685af4abe0e9fd4d7bf495a6554a6276e75" uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" version = "0.5.29" -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+1" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+2" diff --git a/Project.toml b/Project.toml index 0de0a0d0..f0435f68 100644 --- a/Project.toml +++ b/Project.toml @@ -30,7 +30,7 @@ ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollecti BenchmarkTools = "1" ClimaComms = "0.4, 0.5, 0.6" CUDA = "3, 4, 5" -Colors = "0.12" +Colors = "0.12, 0.13" DataStructures = "0.18" DiffEqBase = "6" KernelAbstractions = "0.7, 0.8, 0.9" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index ba08a460..0bdc8d2c 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.6" manifest_format = "2.0" -project_hash = "878a561a71f4ce4b5ee6555d1f75ddc6fdf478c4" +project_hash = "1c1340e84980c5448f8e36bd3cc295c2eeba04c5" [[deps.ADTypes]] git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" @@ -218,10 +218,10 @@ version = "0.6.4" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" [[deps.ClimaCore]] -deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "c5110de141034f18511a9d09b409f9dd568b83ee" +deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"] +git-tree-sha1 = "7632911d7b09fb3e067984626b07b3eb1113e55e" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.14.19" +version = "0.14.20" [deps.ClimaCore.extensions] ClimaCoreCUDAExt = "CUDA" @@ -232,10 +232,10 @@ version = "0.14.19" Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" [[deps.ClimaCorePlots]] -deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] -git-tree-sha1 = "4fc0c2a0845fc34a8d6c0e0a276d62a0d4e50286" +deps = ["ClimaComms", "ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] +git-tree-sha1 = "6430644d60158055458075bf32e5ac24741b1ab9" uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626" -version = "0.2.10" +version = "0.2.11" [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] @@ -410,10 +410,10 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] -git-tree-sha1 = "f8eefbb7e910f59087c4bb09ce670f235758ee4a" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] +git-tree-sha1 = "697abdf4af0e38199e9eabff6ccdf65255de855d" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.158.3" +version = "6.159.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -531,9 +531,9 @@ version = "0.9.3" [[deps.Documenter]] deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"] -git-tree-sha1 = "5a1ee886566f2fa9318df1273d8b778b9d42712d" +git-tree-sha1 = "d0ea2c044963ed6f37703cead7e29f70cba13d7e" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "1.7.0" +version = "1.8.0" [[deps.DocumenterCitations]] deps = ["AbstractTrees", "Bibliography", "Dates", "Documenter", "Logging", "Markdown", "MarkdownAST", "OrderedCollections", "Unicode"] @@ -552,9 +552,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "04c777af6ef65530a96ab68f0a81a4608113aa1d" +git-tree-sha1 = "e333ffd38ecffcf5c6c2dafd10788404ac46fb9f" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.5" +version = "0.8.6" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -612,11 +612,32 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" +[[deps.FastPower]] +git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" +uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" +version = "1.1.1" + + [deps.FastPower.extensions] + FastPowerEnzymeExt = "Enzyme" + FastPowerForwardDiffExt = "ForwardDiff" + FastPowerMeasurementsExt = "Measurements" + FastPowerMonteCarloMeasurementsExt = "MonteCarloMeasurements" + FastPowerReverseDiffExt = "ReverseDiff" + FastPowerTrackerExt = "Tracker" + + [deps.FastPower.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "62ca0547a14c57e98154423419d8a342dca75ca9" +git-tree-sha1 = "91e0e5c68d02bcdaae76d3c8ceb4361e8f28d2e9" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.4" +version = "1.16.5" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -1379,9 +1400,9 @@ version = "1.4.3" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "45470145863035bb124ca51b320ed35d071cc6c2" +git-tree-sha1 = "dae01f8c2e069a683d3a6e17bbae5070ab94786f" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.8" +version = "1.40.9" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1588,9 +1609,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "7527b9adb22904f0f51d8ab85d826f81ebb6f78d" +git-tree-sha1 = "f9195449e0ae7e8daf9d609c9619ecfc2369f62c" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.59.2" +version = "2.60.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1791,9 +1812,9 @@ version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "20cf607cafb31f922bce84d60379203e7a126911" +git-tree-sha1 = "6c6761e08bf5a270905cdd065be633abfa1b155b" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.34" +version = "0.3.35" [[deps.TOML]] deps = ["Dates"] @@ -1943,9 +1964,9 @@ version = "0.2.0" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "7cab92153022a72d4534262cc15a96e21223e3f9" +git-tree-sha1 = "cea8abaa6e43f72f97a09cf95b80c9eb53ff75cf" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.8" +version = "0.4.9" [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] diff --git a/docs/Project.toml b/docs/Project.toml index 85f37b32..72973b90 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -24,4 +24,4 @@ SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [compat] -ClimaCore = "0.14.8" +ClimaCore = "0.14" diff --git a/test/Project.toml b/test/Project.toml index 1cc2fa32..554edab5 100644 --- a/test/Project.toml +++ b/test/Project.toml @@ -25,7 +25,7 @@ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [compat] Aqua = "0.8" ClimaComms = "0.4, 0.5, 0.6" -ClimaCore = "0.14.8" +ClimaCore = "0.14" DataStructures = "0.18" DiffEqBase = "6" DiffEqCallbacks = "2, 3" diff --git a/test/callbacks.jl b/test/callbacks.jl index 95b40094..22ce24d2 100644 --- a/test/callbacks.jl +++ b/test/callbacks.jl @@ -1,4 +1,3 @@ -ENV["CLIMACOMMS_CONTEXT"] = "MPI" # we explicitly need an MPICommsContext. using Test using ClimaComms using ClimaTimeSteppers, DiffEqBase @@ -6,7 +5,7 @@ using ClimaTimeSteppers.Callbacks import MPI @static isdefined(ClimaComms, :device_type) && ClimaComms.@import_required_backends device = ClimaComms.device() -comm_ctx = ClimaComms.MPICommsContext(device) +comm_ctx = ClimaComms.context(device) ClimaComms.init(comm_ctx)