nextflow.config

profiles {
    standard {
      process {
        container = 'ghcr.io/cobralab/magetbrain-nextflow:master'
        executor = 'local'
      }
      apptainer.enabled = true
    }
    niagara {
      process {
        executor = 'slurm'
        queueSize = 1000
        module = 'cobralab'

        withName: registerAffine {
          cpus = 8
          memory = 32.GB
        }
        withName: registerNonLinear {
          cpus = 8
          memory = 32.GB
        }
        withName: resampleLabel {
          cpus = 1
          memory = 4.GB
          time = 15.min
        }
        withName: majorityVote {
          cpus = 2
          memory = 8.GB
          time = 15.min
        }
      }
    }
    beluga {
      process {
        executor = 'slurm'
        queueSize = 1000
        module = 'StdEnv/2023:gcc/12.3:ants/2.5.0:nextflow'
      }
    }


}

process {
  errorStrategy = 'finish'
  cache = 'lenient'
}

report {
  enabled = true
}

dag {
  enabled = true
  verbose = true
}

timeline {
  enabled = true
}