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fs-2023-06-01-interim-slides.tex
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% presentation | handout
\documentclass[aspectratio=169,usepdftitle=true,handout,10pt]{beamer}
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage[english]{babel}
\usepackage{microtype}
\usepackage{etoolbox,tabularx,array}
\usepackage{fp}
\makeatletter
\appto\input@path{{lib/color-palettes/}{lib/sopra-collection/sopra-listings}{lib/code-animation/}}
\usepackage{lib/color-palettes/color-palettes}
\colorlet{paletteA}{paletteA!80!black}
\colorlet{paletteB}{paletteB!80!black}
\colorlet{paletteC}{paletteC!80!black}
\colorlet{paletteD}{paletteD!80!black}
\usepackage[cpalette,encoding,defaultfont,fakeminted]{lib/sopra-collection/sopra-listings/sopra-listings}
\solLoadLanguage{R}
\solsetmintedstyle{plain}
\usepackage{lib/code-animation/code-animation}
\SetCodeAnimationFadeOutMixin{!10!btdm@background}
\CodeAnimationsWithFadeOut
\usepackage[lightmode]{lib/beamer-themes/digital-minimal/beamerthemedigital-minimal}
\usepackage[backend=bibtex8,style=numeric]{biblatex}
\usepackage{csquotes}
\usepackage{siunitx}
\usepackage{makecell}
\let\say\enquote
\addbibresource{references.bib}
\outro{\frametitle{Open Questions} \begin{itemize}
\itemsep10pt
\item<2-> What other features are of interest? (if any)
\item<2-> Which domain should we use for the quads?
\item<2-> What parts of the data-flow-information are important?
\end{itemize}}
\usetikzlibrary{arrows.meta,backgrounds,shapes.symbols,decorations.pathreplacing,shapes.geometric}
\usepackage{forest}
\input{link.tex}
% too short of a presentation
\sectionbannerfalse
\title{Interesting Patterns in R Code}
\setauthormailsubject{CodeInspector\%20|\%20Interim\%201}
\subtitle{CodeInspector --- Monthly-Meeting}
\setfootmarker{CodeInspector~\faAngleRight\ Monthly}
\date{\today}
\author[F.~Sihler]{Florian Sihler}
\email{[email protected]}
\errorcontextlines9999
% twoheadleftarrow
% TODO: \raisebox{.025ex}{\guilsinglleft}\kern-.65ex---
\def\LeftArrow{\text{\BeginAccSupp{method=escape,ActualText={<-}}\(\leftarrow\)\EndAccSupp{}}}
\def\RightArrow{\text{\BeginAccSupp{method=escape,ActualText={<-}}\(\rightarrow\)\EndAccSupp{}}}
\def\DoubleLeftArrow{\text{\BeginAccSupp{method=escape,ActualText={<<-}}\(\twoheadleftarrow\)\EndAccSupp{}}}
\def\DoubleRightArrow{\text{\BeginAccSupp{method=escape,ActualText={<<-}}\(\twoheadrightarrow\)\EndAccSupp{}}}
\lstset{add to literate={<-}{{{\!\LeftArrow\!}}}2
{<<-}{{{\!\DoubleLeftArrow\!}}}2
{->}{{{\!\RightArrow\!}}}2
{->>}{{{\!\DoubleRightArrow\!}}}2
}
\addtobeamertemplate{footline}{\begin{tikzpicture}[overlay,remember picture]
\node[below left=4.65mm,btdm@softtext] at (current page.north east)
{\Large\textbf{\MakeUppercase{uulm-sp}}};
\end{tikzpicture}}{}
\begin{document}
\titleframe<2->
\section[Feature Extraction]{Feature Extraction}
\def\Package#1{\T{\link{https://www.rdocumentation.org/packages/#1}{#1}}}
\def\rotHead#1{\llap{\rotatebox{-52}{{\rlap{\tiny#1}}}}}
\newcommand<>\HItem[1]{\def\Mixin{30!white}\only#2{\def\Mixin{}}\begin{colormixin}{\Mixin}\item#1\end{colormixin}}
\colorlet{@back}{gray!90!white}
\def\Perc#1#2{\bgroup\smaller\qty[round-precision=2,round-mode=places]{#1}\percent\llap{\raisebox{-5pt}{\scalebox{.6}{\small\strut\color{@back}\num[group-digits,group-minimum-digits=4,group-separator={\,}]{#2}}}}\egroup}
\def\CurrentSum{1}
\newcommand\Print[2][\CurrentSum]{\FPdiv\Out{#2}{#1}\FPmul\Out{\Out}{100}\Perc{\Out}{#2}}
\begin{frame}[c]{\insertsection}
\def\arraystretch{1.2}\vspace*{-\medskipamount}%
\begin{columns}[onlytextwidth,c]
\column{.3\linewidth}
\begin{uncoverenv}<2->
\begin{itemize}
\itemsep6pt
\HItem<handout:1|2,3>{Packages}
\HItem<handout:2|2,4>{Roxygen2}
\HItem<handout:3|2,5>{Function Definitions}
\HItem<handout:4|2,6>{Function Calls}
\HItem<handout:5|2,7>{Values}
\HItem<handout:6|2,8>{Assignments}
\HItem<handout:7|2,9>{Loops}
\HItem<handout:8|2,10>{Controlflow}
\HItem<handout:9|2,11>{Data-Access}
\HItem<handout:10|2,12>{Meta}
\end{itemize}
\end{uncoverenv}
\column{.69\linewidth}
\footnotesize\centering
\begin{onlyenv}<3|handout:1>
\def\P{23701}\def\U{20853}% Total Imports
% \def\P{25691}\def\ % based on files
\begin{tabular}{rl@{\hskip4em}rl}
\multicolumn{4}{c}{\textbf{Top imported packages}} \\
\multicolumn{2}{c}{\textit{Package Code}} & \multicolumn{2}{c}{\textit{User Code}} \smallskip\\
\Print[\P]{1112} & \Package{stats} & \Print[\U]{1212} & \Package{ggplot2} \\
\Print[\P]{934} & \Package{utils} & \Print[\U]{1179} & \Package{dplyr} \\
\Print[\P]{848} & \Package{dplyr} & \Print[\U]{772} & \Package{tidyverse} \\
\Print[\P]{812} & \Package{rlang} & \Print[\U]{623} & \Package{lme4} \\
\Print[\P]{802} & \Package{testthat} & \Print[\U]{455} & \Package{car} \\
\Print[\P]{674} & \Package{cli} & \Print[\U]{408} & \Package{plyr} \\
% \Print[\P]{661} & \Package{withr} & \Print[\U]{319} & \Package{tidyr} \\
\end{tabular}\smallskip\\
% \begin{tabular}{lrr}
% \multicolumn{3}{c}{\textbf{Ways of Import}} \\
% & \textit{Package Code} & \textit{User Code} \smallskip\\
% \T{::} & 15\,788 & 1\,876 \\
% \T{:::} & 637 & 42 \\
% \T{library} & 5\,224 & 17\,349 \\
% \T{require} & 911 & 1\,514 \\
% \T{requireNamespace} & 887 & 24 \\
% \textit{by variable} & 165 & 6 \\
% \T{loadNamespace} & 66 & 0 \\
% \T{*apply} & 21 & 42 \\
% \T{attachNamespace} & 2 & 0 \\
% \end{tabular}
\begin{tabular}{l *9{@{\hskip3pt}r}}
\multicolumn{10}{c}{\textbf{Ways of import}} \smallskip\\
\textit{Package} & \Print[\P]{15788} & \Print[\P]{637} & \Print[\P]{5224} & \Print[\P]{911} & \Print[\P]{887} & \Print[\P]{165} & \Print[\P]{66} & \Print[\P]{21} & \Print[\P]{2}\\
\textit{User} & \Print[\U]{1876} & \Print[\U]{42} & \Print[\U]{17349} & \Print[\U]{1514} & \Print[\U]{24} & \Print[\U]{6} & \Print[\U]{0} & \Print[\U]{42} & \Print[\U]{0}\vspace*{-\medskipamount}\\
& \rotHead{::} & \rotHead{:::} & \rotHead{lib.} & \rotHead{req.} & \rotHead{req.Ns.} & \rotHead{var.} & \rotHead{load.} & \rotHead{*apply} & \rotHead{attach.}
\end{tabular}\qquad~~
\end{onlyenv}
\begin{onlyenv}<4|handout:2>
\begin{tabular}{lrr}
\multicolumn{3}{c}{\textbf{Comments}} \\
& \textit{Package Code} & \textit{User Code} \smallskip\\
Roxygen/Total &492\,510/884\,950 & 1\,486/311\,344 \\
\multicolumn{3}{c}{\textbf{Used Imports}} \\
% & \textit{Package Code} & \textit{User Code} \smallskip\\
\T{@import} & 305 & 8 \\
\T{@importFrom} & 5\,587& 6 \\
\T{@importClassesFrom} & 6 & 0\\
\T{@importMethodsFrom} & 8 & 0\\
\T{@useDynLib} & 605 & 0\\
\multicolumn{3}{c}{\textbf{Used Exports}} \\
% & \textit{Package Code} & \textit{User Code} \smallskip\\
\T{@export} & 33\,186 & 13 \\
\T{@exportClass} & 27& 0 \\
\T{@exportMethod} & 81& 0\\
\T{@exportS3Method} & 14& 0\\
\T{@exportPattern} & 1& 0\\
% TODO: evalNamespace | rawNamespace
\end{tabular}
\end{onlyenv}
\begin{onlyenv}<5|handout:3>
\def\P{131953}\def\U{12122}%
\begin{tabular}{lrr}
% \multicolumn{3}{c}{\textbf{Defined Functions}} \\
& \textit{Package Code} & \textit{User Code} \smallskip\\
\T{Total} & 131\,953 & 12\,122 \\
\T{Lambdas} & \Print[\P]{22} & \Print[\U]{0} \\
\T{Assigned} & \Print[\P]{96161} & \Print[\U]{6821} \\
\T{Direct-Call} & \Print[\P]{91} & \Print[\U]{0} \\
\T{Nested} & \Print[\P]{25521} & \Print[\U]{2240} \\
\T{Recursive} & \Print[\P]{1058} & \Print[\U]{10} \\
\end{tabular}
\end{onlyenv}
% Function calls
\begin{onlyenv}<6|handout:4>
\def\P{1956887}\def\U{980964}%
\begin{tabular}{rl@{\hskip4em}rl}
% \multicolumn{3}{c}{\textbf{Called Functions}} \\
\multicolumn{2}{c}{\textit{Package Code}} & \multicolumn{2}{c}{\textit{User Code}} \smallskip\\
1\,956\,887 & \textit{all} & 980\,964 & \textit{all} \\
\Print[\P]{133650} & \T{c} & \Print[\U]{110020} & \T{c} \\
\Print[\P]{57398} & \T{list} & \Print[\U]{19849} & \T{length} \\
\Print[\P]{56842} & \T{length} & \Print[\U]{18975} & \T{library} \\
\Print[\P]{50534} & \T{expect\_equal} & \Print[\U]{18797} & \T{summary} \\
\Print[\P]{42279} & \T{is.null} & \Print[\U]{18009} & \T{aes} \\
\Print[\P]{37238} & \T{test\_that} & \Print[\U]{16303} & \T{list} \\
\Print[\P]{33688} & \T{return} & \Print[\U]{13162} & \T{element\_text} \\
\end{tabular}
\end{onlyenv}
\begin{onlyenv}<7|handout:5>
\begin{tabular}{lrr}
% \multicolumn{3}{c}{\textbf{Defined Functions}} \\
& \textit{Package Code} & \textit{User Code} \smallskip\\
{Numbers} & 1\,094\,489 & 844\,344 \\
\quad{Imaginary} & \Print[1094489]{1436} & \Print[844344]{37} \\
\quad{Integers} & \Print[1094489]{106843} & \Print[844344]{346} \\
\quad{FloatHex} & \Print[1094489]{12} & \Print[844344]{0} \\
{Logical} & 164\,249 & 64\,421\\
{Special} & 94\,590 & 20\,586\\ % NULL | NA | ...
{Strings} & 852\,103 & 488\,999\\
\end{tabular}\\
% TODO: Percentages?
\end{onlyenv}
\begin{onlyenv}<8|handout:6>
\def\P{772263}\def\U{396999}%
\begin{tabular}{lrr}
% \multicolumn{3}{c}{\textbf{Defined Functions}} \\
& \textit{Package Code} & \textit{User Code} \smallskip\\
{Operator} & 772\,263 & 396\,999 \\
\quad{\LeftArrow} & \Print[\P]{730160} & \Print[\U]{323286} \\
\quad{\DoubleLeftArrow} & \Print[\P]{4211} & \Print[\U]{431} \\
\quad{=} & \Print[\P]{37048} & \Print[\U]{71769} \\
\quad{\RightArrow} & \Print[\P]{145} & \Print[\U]{1004} \\ % grep -o "\"->\"" assignmentOperator.txt | wc -l
\quad{\DoubleRightArrow} & \Print[\P]{1} & \Print[\U]{0} \\
\quad{\textit{Others}} & \Print[\P]{698} & \Print[\U]{509} \\
{Special} & 82\,800 & 86\,171\\ % with bracket
{Nested} & 6\,479 & 1\,680\\ % Directly
\end{tabular}
\end{onlyenv}
\begin{onlyenv}<9|handout:7>
\begin{tabular}{lrr}
% \multicolumn{3}{c}{\textbf{Defined Functions}} \\
& \textit{Package Code} & \textit{User Code} \smallskip\\
\T{for} & 19\,298 & 13\,679 \\
\T{while} & 1\,357 & 389 \\
\T{repeat} & 233 & 50 \\
\T{break} & 1\,112 & 205 \\
\T{next} & 932 & 282 \\
\end{tabular}
\end{onlyenv}
\begin{onlyenv}<10|handout:8>
\begin{tabular}{lrr}
% \multicolumn{3}{c}{\textbf{Defined Functions}} \\
& \textit{Package Code} & \textit{User Code} \smallskip\\
{if-then-else} & 216\,722 & 13\,773 \\
\quad{nested} & \Print[216722]{152022} & \Print[13773]{9711} \\
\quad{constant} & \Print[216722]{750} & \Print[13773]{69} \\
\quad{variable} & \Print[216722]{24844} & \Print[13773]{723} \\
switch-case & 3\,421 & 46 \\
\end{tabular}
\end{onlyenv}
\begin{onlyenv}<11|handout:9>
\begin{tabular}{lrr}
% \multicolumn{3}{c}{\textbf{Defined Functions}} \\
& \textit{Package Code} & \textit{User Code} \smallskip\\
\T{[} & 186\,893 & 188\,888\\
\quad{empty} & \Print[186893]{1257} & \Print[188888]{204}\\
\quad{constant} & \Print[186893]{43684} & \Print[188888]{39587}\\
\quad{variable} & \Print[186893]{63805} & \Print[188888]{42970}\\
% \quad{comma} & & \\
\T{[[} & 62\,904 & 17\,248\\
\quad{empty} & \Print[62904]{10} & \Print[17248]{0} \\
\quad{constant} & \Print[62904]{30508} & \Print[17248]{8601} \\
\quad{variable} & \Print[62904]{29625} & \Print[17248]{8011} \\
chained & 87\,134 & 90\,362\\
by name & 271\,577 & 283\,081\\% or nested
by slot & 19\,980 & 3\,198\\
\end{tabular}
\end{onlyenv}
\begin{onlyenv}<12|handout:10>
\begin{tabular}{lrr}
& \textit{Package Code} & \textit{User Code} \smallskip\\
Count & 25\,691 & 4\,230 \\
{File Length} & & \\
\quad{min} & 1 & 1 \\
\quad{max} & 29\,211 & 7\,100\\
\quad{avg} & 145 & 348 \\
\quad{median} & 70 & 184 \\
{Line Length} & & \\
\quad{min} & 0 & 0 \\
\quad{max} & 116\,068 & 33\,341 \\
\quad{avg} & 32 & 44 \\
\quad{median} & 28 & 36 \\
\end{tabular}
\end{onlyenv}
\end{columns}
\end{frame}
\section[Quad Generation]{Quad Generation}
\begin{frame}[fragile]{\insertsection}
\begin{itemize}
\item<2-> We can generate Quads from the normalized AST
\item<3-> Limited to files that can be parsed
\end{itemize}
\bigskip
\begin{uncoverenv}<4->
\lstfs{5}\soldisablenumhl
\begin{minted}{void}
<https://uni-ulm.de/r-ast/filename/0> <https://uni-ulm.de/r-ast/type> "exprlist" <filename> .
<https://uni-ulm.de/r-ast/filename/0> <https://uni-ulm.de/r-ast/children-0> <https://uni-ulm.de/r-ast/filename/1> <filename> .
<https://uni-ulm.de/r-ast/filename/1> <https://uni-ulm.de/r-ast/location> <https://uni-ulm.de/r-ast/filename/2> <filename> .
<https://uni-ulm.de/r-ast/filename/2> <https://uni-ulm.de/r-ast/start> <https://uni-ulm.de/r-ast/filename/3> <filename> .
<https://uni-ulm.de/r-ast/filename/3> <https://uni-ulm.de/r-ast/line> "1"^^<http://www.w3.org/2001/XMLSchema#integer> <filename> .
<https://uni-ulm.de/r-ast/filename/3> <https://uni-ulm.de/r-ast/column> "1"^^<http://www.w3.org/2001/XMLSchema#integer> <filename> .
<https://uni-ulm.de/r-ast/filename/2> <https://uni-ulm.de/r-ast/end> <https://uni-ulm.de/r-ast/filename/4> <filename> .
<https://uni-ulm.de/r-ast/filename/4> <https://uni-ulm.de/r-ast/line> "1"^^<http://www.w3.org/2001/XMLSchema#integer> <filename> .
<https://uni-ulm.de/r-ast/filename/4> <https://uni-ulm.de/r-ast/column> "1"^^<http://www.w3.org/2001/XMLSchema#integer> <filename> .
<https://uni-ulm.de/r-ast/filename/1> <https://uni-ulm.de/r-ast/lexeme> "1" <filename> .
<https://uni-ulm.de/r-ast/filename/1> <https://uni-ulm.de/r-ast/type> "NUM_CONST" <filename> .
\end{minted}
\end{uncoverenv}\bigskip
\begin{itemize}
\item<5-> Question: Which domain should we use?
\end{itemize}
\end{frame}
\section[Ontology]{Ontology}
\begin{frame}{\insertsection}
\begin{uncoverenv}<2->
\vspace*{-1.5\baselineskip}\tiny\begin{forest}
for tree={font=\ttfamily,grow=east,anchor=west,child anchor=west,l sep=2cm}
[Base
[RUnaryOp,grow=east,anchor=west,child anchor=west[RLogicalUnaryOp][RArithmeticUnaryOp]]
[RExpressionList]
[RFunctionCall]
[RRepeatLoop]
[RIfThenElse]
[RWhileLoop]
[RForLoop]
[RFunctionDefinition]
[RArgument]
[RComment]
[RLogical]
[RSymbol]
[RBreak]
[RNumber]
[RString]
[RBinaryOp,grow=east,anchor=west,child anchor=west[RAssignmentOp][RComparisonBinaryOp][RArithmeticBinaryOp][RLogicalBinaryOp]]
]
\end{forest}
\end{uncoverenv}
\begin{tikzpicture}[overlay,remember picture]
\onslide<3->{\node[left=5mm,yshift=-5mm,font=\scriptsize\sffamily,color=gray] at(current page.east) {\link{https://github.com/Code-Inspect/ontology/issues/1}{https://github.com/Code-Inspect/ontology/issues/1}};}
\end{tikzpicture}
\end{frame}
\end{document}