_pkgdown.yml

title: VertexWiseR
url: https://cogbrainhealthlab.github.io/VertexWiseR/
template:
  bootstrap: 5

reference:
  - title: Requirements check
    desc: >
    contents:
    - VWRfirstrun
    
  - title: Surface data extraction and smoothing
    desc: >
    contents:
    - HIPvextract
    - SURFvextract
    - FSLRvextract
    - CAT12vextract
    - smooth_surf
    - fs_stats
    
  - title: Main analysis functions
  - subtitle: Vertex-Wise analysis
    desc: >
    contents:
    - RFT_vertex_analysis
    - TFCE_vertex_analysis
    - TFCE_vertex_analysis_mixed
    - TFCE_threshold
  
  - subtitle: Plotting
    desc: >
    contents:
    - plot_surf
    - plot_surf3d
  
  - title: Other functions
  - subtitle: Atlas manipulations
    desc: >
    contents:
    - atlas_to_surf
    - surf_to_atlas
    
  - subtitle: Decoding surface data
    desc: >
    contents:
    - decode_surf_data 
     
  - subtitle: Conversions
    desc: >
    contents:   
    - fs5_to_fs6
    - fs6_to_fs5
    - surf_to_vol
    
  - title: Data objects
  
  - subtitle: Object classes
    desc: >
    contents:
    - MNIsurface-class
    - edgelist-class
    - ROImap-class
  
  - subtitle: Edges
    desc: >
    contents:
    - edgelist_hip
    
  - subtitle: Template maps
    desc: >
    contents:
    - fs6_to_fs5_map
    - hip_points_cells
    - MNImap_hip
    
  - subtitle: Parcellation maps
    desc: >
    contents:
    - ROImap_fs5
    - ROImap_fs6
    - ROImap_fslr32k
    - ROImap_hip