diff --git a/docs/reference/decode_surf_data.html b/docs/reference/decode_surf_data.html index 7757d78..705d57c 100644 --- a/docs/reference/decode_surf_data.html +++ b/docs/reference/decode_surf_data.html @@ -42,7 +42,7 @@

Usage

-
decode_surf_data(surf_data, contrast = "positive", keyword_list = F)
+
decode_surf_data(surf_data, contrast = "positive", keywords_list = F)
@@ -55,7 +55,7 @@

ArgumentsArgumentsValue

-

A data.frame object listing the keywords and their Pearson's R values

+

A data.frame object listing the keywords and their Pearson's R values. If keywords_list is TRUE, a list containing the same data.frame object and the list of all the database keywords.

Details

@@ -74,724 +74,512 @@

DetailsExamples

CTv = rbinom(20484, 1, 0.001) 
 decode_surf_data(CTv, 'positive')
+#> Checking for VertexWiseR system requirements ...
+#> 
 #> Converting and interpolating the surface data...
 #> Correlating input image with images in the neurosynth database. This may take a while...
 #>                     keyword      r
-#> 195                encoding  0.052
-#> 538               retrieval  0.051
-#> 311                language  0.046
-#> 510             recognition  0.044
-#> 202                episodic  0.043
-#> 381                   motor  0.041
-#> 571                semantic  0.041
-#> 509                  recall  0.039
-#> 348                  memory  0.038
-#> 704                    word  0.036
-#> 55         autobiographical  0.035
-#> 198              engagement  0.035
-#> 424                   nouns  0.035
-#> 232                familiar  0.032
-#> 425                   novel  0.032
-#> 507             reappraisal  0.032
-#> 620                  spoken  0.032
-#> 648                temporal  0.032
-#> 681                   verbs  0.032
-#> 347                memories  0.031
-#> 391                movement  0.031
-#> 449                    pain  0.031
-#> 200                 english  0.030
-#> 713                 younger  0.030
-#> 708                   words  0.029
-#> 194                 empathy  0.028
-#> 203         episodic memory  0.028
-#> 233             familiarity  0.028
-#> 314               languages  0.028
-#> 455                patterns  0.027
-#> 6                    action  0.026
-#> 173                    dual  0.026
-#> 332              linguistic  0.026
-#> 417                 neutral  0.026
-#> 521               rehearsal  0.026
-#> 308           judgment task  0.025
-#> 384           motor imagery  0.025
-#> 438                     old  0.024
-#> 467             perspective  0.024
-#> 56  autobiographical memory  0.023
-#> 92            comprehension  0.023
-#> 98               conceptual  0.023
-#> 113           decision task  0.023
-#> 279                imagined  0.023
-#> 284                implicit  0.023
-#> 306                  judged  0.023
-#> 313        language network  0.023
-#> 327                 lexical  0.023
-#> 431                  object  0.023
-#> 490              production  0.023
-#> 516            recollection  0.023
-#> 60                avoidance  0.022
-#> 196      encoding retrieval  0.022
-#> 242                  finger  0.022
-#> 290            index finger  0.022
-#> 328        lexical decision  0.022
-#> 439                   older  0.022
-#> 440            older adults  0.022
-#> 471                pictures  0.022
-#> 506                 reality  0.022
-#> 528             remembering  0.022
-#> 529              repetition  0.022
-#> 572         semantic memory  0.022
-#> 669              unfamiliar  0.022
-#> 8                   actions  0.021
-#> 77                  chinese  0.021
-#> 234                    fear  0.021
-#> 385       motor performance  0.021
-#> 447            orthographic  0.021
-#> 537               retention  0.021
-#> 583                sentence  0.021
-#> 613                 speaker  0.021
-#> 682              violations  0.021
-#> 214               expertise  0.020
-#> 280               imitation  0.020
-#> 333                listened  0.020
-#> 349         memory encoding  0.020
-#> 392               movements  0.020
-#> 548                    rich  0.020
-#> 619       speech production  0.020
-#> 677                    verb  0.020
-#> 20                   adults  0.019
-#> 157     distributed network  0.019
-#> 184      emotion regulation  0.019
-#> 219              extinction  0.019
-#> 366                  mirror  0.019
+#> 449                    pain  0.037
+#> 20                   adults  0.033
+#> 57                autonomic  0.033
+#> 111                decision  0.033
+#> 194                 empathy  0.031
+#> 198              engagement  0.030
+#> 440            older adults  0.029
+#> 26                    aging  0.028
+#> 22                affective  0.026
+#> 112         decision making  0.026
+#> 379              motivation  0.026
+#> 676                 valence  0.026
+#> 63     behavioral responses  0.025
+#> 343           matching task  0.025
+#> 412    network connectivity  0.025
+#> 439                   older  0.025
+#> 624              strategies  0.025
+#> 381                   motor  0.024
+#> 34             anticipation  0.023
+#> 219              extinction  0.023
+#> 257                    gaze  0.023
+#> 262           goal directed  0.023
+#> 8                   actions  0.022
+#> 280               imitation  0.022
+#> 360              mesolimbic  0.022
+#> 538               retrieval  0.022
+#> 543                  reward  0.022
+#> 332              linguistic  0.021
+#> 342                matching  0.021
+#> 405              navigation  0.021
+#> 427                 noxious  0.021
+#> 550             risk taking  0.021
+#> 599        social cognition  0.021
+#> 666             uncertainty  0.021
+#> 675                updating  0.021
+#> 117         default network  0.020
+#> 187   emotional information  0.020
+#> 237                feedback  0.020
+#> 358          mental imagery  0.020
+#> 609                 spatial  0.020
+#> 21                   affect  0.019
+#> 24                      age  0.019
+#> 60                avoidance  0.019
+#> 89             compensatory  0.019
+#> 141            discriminate  0.019
+#> 195                encoding  0.019
+#> 251                 focused  0.019
+#> 285               impulsive  0.019
+#> 287               incentive  0.019
+#> 355            memory tasks  0.019
+#> 364          mild cognitive  0.019
 #> 367           mirror neuron  0.019
-#> 459              perceiving  0.019
-#> 470                 picture  0.019
-#> 578            sensorimotor  0.019
+#> 369                monetary  0.019
+#> 420         neutral stimuli  0.019
+#> 548                    rich  0.019
+#> 551                   risky  0.019
 #> 602     social interactions  0.019
-#> 714          younger adults  0.019
-#> 243        finger movements  0.018
-#> 260                gestures  0.018
+#> 660                  traits  0.019
+#> 19                adulthood  0.018
+#> 29        alzheimer disease  0.018
+#> 157     distributed network  0.018
+#> 203         episodic memory  0.018
+#> 216               expressed  0.018
+#> 238                 feeling  0.018
+#> 319                 learned  0.018
 #> 353        memory retrieval  0.018
-#> 355            memory tasks  0.018
-#> 448                   paced  0.018
-#> 454                 pattern  0.018
-#> 502               reactions  0.018
-#> 512        recognition task  0.018
-#> 518              regulation  0.018
-#> 605           somatosensory  0.018
-#> 26                    aging  0.017
-#> 58                 aversive  0.017
-#> 187   emotional information  0.017
-#> 209      executive function  0.017
-#> 266                  handed  0.017
+#> 455                patterns  0.018
+#> 486             preparation  0.018
+#> 592                 sighted  0.018
+#> 654               time task  0.018
+#> 655                     tom  0.018
+#> 695                visually  0.018
+#> 28                alzheimer  0.017
+#> 69                    blind  0.017
+#> 145          discriminative  0.017
+#> 185               emotional  0.017
+#> 234                    fear  0.017
 #> 302           interpersonal  0.017
-#> 312  language comprehension  0.017
-#> 320                learning  0.017
-#> 468            phonological  0.017
+#> 336                  losses  0.017
+#> 348                  memory  0.017
+#> 359             mentalizing  0.017
 #> 576              sensations  0.017
-#> 678                  verbal  0.017
-#> 705               word form  0.017
+#> 625                strategy  0.017
+#> 635               sustained  0.017
+#> 643                  target  0.017
+#> 710                   young  0.017
+#> 711            young adults  0.017
 #> 7        action observation  0.016
-#> 22                affective  0.016
-#> 88             compensation  0.016
-#> 193                empathic  0.016
-#> 358          mental imagery  0.016
-#> 427                 noxious  0.016
-#> 450                 painful  0.016
-#> 491             pseudowords  0.016
-#> 591              short term  0.016
-#> 616      spectrum disorders  0.016
-#> 642                 tapping  0.016
-#> 655                     tom  0.016
-#> 667              understand  0.016
-#> 694             visual word  0.016
-#> 249                 fluency  0.015
-#> 278                 imagine  0.015
-#> 330                    limb  0.015
-#> 398                 musical  0.015
-#> 485            preferential  0.015
-#> 99               confidence  0.014
-#> 238                 feeling  0.014
-#> 244          finger tapping  0.014
-#> 307                judgment  0.014
-#> 382           motor control  0.014
-#> 387          motor premotor  0.014
-#> 463        performance task  0.014
-#> 486             preparation  0.014
-#> 539               retrieved  0.014
-#> 564               sclerosis  0.014
-#> 695                visually  0.014
-#> 57                autonomic  0.013
-#> 352        memory processes  0.013
-#> 433                 objects  0.013
-#> 526                remember  0.013
-#> 527              remembered  0.013
-#> 584  sentence comprehension  0.013
-#> 700                   vocal  0.013
-#> 10                 adaptive  0.012
-#> 21                   affect  0.012
-#> 31                 amnestic  0.012
-#> 142           discriminated  0.012
-#> 183                 emotion  0.012
-#> 264                    hand  0.012
-#> 317             lateralized  0.012
-#> 365                mind tom  0.012
-#> 511      recognition memory  0.012
-#> 585               sentences  0.012
-#> 617                  speech  0.012
+#> 43                attention  0.016
+#> 55         autobiographical  0.016
+#> 56  autobiographical memory  0.016
+#> 77                  chinese  0.016
+#> 202                episodic  0.016
+#> 204                   error  0.016
+#> 261                    goal  0.016
+#> 371         monetary reward  0.016
+#> 375              monitoring  0.016
+#> 410       negative feedback  0.016
+#> 474                planning  0.016
+#> 480              prediction  0.016
+#> 531     response inhibition  0.016
+#> 534                    rest  0.016
+#> 714          younger adults  0.016
+#> 6                    action  0.015
+#> 54          autism spectrum  0.015
+#> 58                 aversive  0.015
+#> 284                implicit  0.015
+#> 385       motor performance  0.015
+#> 438                     old  0.015
+#> 448                   paced  0.015
+#> 88             compensation  0.014
+#> 114               decisions  0.014
+#> 144     discrimination task  0.014
+#> 245                fixation  0.014
+#> 274        high functioning  0.014
+#> 301           interoceptive  0.014
+#> 365                mind tom  0.014
+#> 380            motivational  0.014
+#> 437                 oddball  0.014
+#> 499                reaction  0.014
+#> 546                 rewards  0.014
+#> 559                salience  0.014
+#> 561                 salient  0.014
+#> 623               strategic  0.014
+#> 712             young older  0.014
+#> 713                 younger  0.014
+#> 41                  arousal  0.013
+#> 90                competing  0.013
+#> 101             conflicting  0.013
+#> 143          discrimination  0.013
+#> 156                distress  0.013
+#> 211              expectancy  0.013
+#> 464              peripheral  0.013
+#> 477                pleasant  0.013
+#> 478                positive  0.013
+#> 510             recognition  0.013
+#> 555                   rules  0.013
+#> 611     spatial information  0.013
+#> 616      spectrum disorders  0.013
+#> 645                 targets  0.013
+#> 697           visuo spatial  0.013
+#> 78                   choice  0.012
+#> 115                 default  0.012
+#> 181               effortful  0.012
+#> 196      encoding retrieval  0.012
+#> 199                engaging  0.012
+#> 205                  errors  0.012
+#> 214               expertise  0.012
+#> 273              heart rate  0.012
+#> 320                learning  0.012
+#> 345                     mci  0.012
+#> 366                  mirror  0.012
+#> 398                 musical  0.012
+#> 541                 reverse  0.012
 #> 644        target detection  0.012
-#> 710                   young  0.012
-#> 84     cognitive impairment  0.011
-#> 164                dominant  0.011
-#> 215                explicit  0.011
-#> 218             expressions  0.011
-#> 237                feedback  0.011
-#> 248                flexibly  0.011
-#> 357                     men  0.011
-#> 364          mild cognitive  0.011
-#> 517                regulate  0.011
-#> 594                  silent  0.011
-#> 598                  social  0.011
-#> 653             threatening  0.011
-#> 706              word pairs  0.011
-#> 29        alzheimer disease  0.010
-#> 32                    anger  0.010
-#> 54          autism spectrum  0.010
-#> 117         default network  0.010
-#> 145          discriminative  0.010
-#> 303                      iq  0.010
-#> 309               judgments  0.010
-#> 400                   names  0.010
-#> 580                 sensory  0.010
-#> 635               sustained  0.010
-#> 641                 tactile  0.010
-#> 668              unexpected  0.010
-#> 673               unrelated  0.010
-#> 693           visual stream  0.010
-#> 712             young older  0.010
-#> 69                    blind  0.009
-#> 156                distress  0.009
-#> 191             emotionally  0.009
-#> 315              laterality  0.009
-#> 360              mesolimbic  0.009
-#> 390              motor task  0.009
-#> 394      multiple sclerosis  0.009
-#> 552                rotation  0.009
-#> 631              subjective  0.009
-#> 640               syntactic  0.009
-#> 679          verbal fluency  0.009
-#> 132          detection task  0.008
-#> 135           developmental  0.008
-#> 259                  german  0.008
-#> 388          motor response  0.008
-#> 474                planning  0.008
-#> 615       spectrum disorder  0.008
-#> 625                strategy  0.008
-#> 632       subsequent memory  0.008
-#> 650             term memory  0.008
-#> 664                    true  0.008
-#> 698              visuomotor  0.008
-#> 707        word recognition  0.008
-#> 24                      age  0.007
-#> 28                alzheimer  0.007
-#> 89             compensatory  0.007
-#> 101             conflicting  0.007
-#> 118   deficit hyperactivity  0.007
-#> 199                engaging  0.007
-#> 272                   heart  0.007
-#> 276  hyperactivity disorder  0.007
-#> 368                mnemonic  0.007
-#> 375              monitoring  0.007
-#> 401                  naming  0.007
-#> 405              navigation  0.007
-#> 419        neutral pictures  0.007
-#> 426                 novelty  0.007
-#> 437                 oddball  0.007
-#> 461              perception  0.007
-#> 505                 readers  0.007
-#> 514              recognized  0.007
-#> 575               sensation  0.007
-#> 592                 sighted  0.007
-#> 599        social cognition  0.007
-#> 690       visual perception  0.007
-#> 3                     abuse  0.006
-#> 38                  aphasia  0.006
-#> 63     behavioral responses  0.006
-#> 114               decisions  0.006
-#> 158            disturbances  0.006
+#> 665               uncertain  0.012
+#> 31                 amnestic  0.011
+#> 42                      asd  0.011
+#> 61                awareness  0.011
+#> 183                 emotion  0.011
+#> 188     emotional responses  0.011
+#> 200                 english  0.011
+#> 233             familiarity  0.011
+#> 272                   heart  0.011
+#> 349         memory encoding  0.011
+#> 384           motor imagery  0.011
+#> 454                 pattern  0.011
+#> 500           reaction time  0.011
+#> 507             reappraisal  0.011
+#> 554                    rule  0.011
+#> 580                 sensory  0.011
+#> 631              subjective  0.011
+#> 2                  abstract  0.010
+#> 79                  choices  0.010
+#> 104   congruent incongruent  0.010
+#> 113           decision task  0.010
+#> 122                dementia  0.010
+#> 173                    dual  0.010
+#> 190       emotional valence  0.010
+#> 193                empathic  0.010
+#> 212             expectation  0.010
+#> 255                gambling  0.010
+#> 328        lexical decision  0.010
+#> 377                   moral  0.010
+#> 417                 neutral  0.010
+#> 444             orientation  0.010
+#> 450                 painful  0.010
+#> 487             preparatory  0.010
+#> 533          response times  0.010
+#> 537               retention  0.010
+#> 544     reward anticipation  0.010
+#> 652                  threat  0.010
+#> 674                upcoming  0.010
+#> 684                  visual  0.010
+#> 686         visual auditory  0.010
+#> 699            visuospatial  0.010
+#> 53                   autism  0.009
+#> 119                   delay  0.009
+#> 180                  effort  0.009
+#> 278                 imagine  0.009
+#> 291                 inhibit  0.009
+#> 296                insights  0.009
+#> 388          motor response  0.009
+#> 403            naturalistic  0.009
+#> 429                 numbers  0.009
+#> 482             predictions  0.009
+#> 512        recognition task  0.009
+#> 598                  social  0.009
+#> 615       spectrum disorder  0.009
+#> 622             stop signal  0.009
+#> 690       visual perception  0.009
+#> 10                 adaptive  0.008
+#> 70                   bodily  0.008
+#> 130                  detect  0.008
+#> 166            dopaminergic  0.008
+#> 171                    drug  0.008
+#> 208       executive control  0.008
+#> 288         incentive delay  0.008
+#> 318                   learn  0.008
+#> 382           motor control  0.008
+#> 411              negativity  0.008
+#> 446               orienting  0.008
+#> 485            preferential  0.008
+#> 504                    read  0.008
+#> 516            recollection  0.008
+#> 519              regulatory  0.008
+#> 641                 tactile  0.008
+#> 642                 tapping  0.008
+#> 661                transfer  0.008
+#> 672              unpleasant  0.008
+#> 692         visual stimulus  0.008
+#> 14              adolescence  0.007
+#> 83      cognitive emotional  0.007
+#> 84     cognitive impairment  0.007
+#> 91              competition  0.007
+#> 103               congruent  0.007
+#> 184      emotion regulation  0.007
+#> 186         emotional faces  0.007
+#> 207               executive  0.007
+#> 235                 fearful  0.007
+#> 243        finger movements  0.007
+#> 247                flexible  0.007
+#> 254  frontoparietal network  0.007
+#> 260                gestures  0.007
+#> 266                  handed  0.007
+#> 279                imagined  0.007
+#> 292              inhibition  0.007
+#> 321           learning task  0.007
+#> 372                   money  0.007
+#> 459              perceiving  0.007
+#> 501          reaction times  0.007
+#> 523  reinforcement learning  0.007
+#> 560        salience network  0.007
+#> 568     selective attention  0.007
+#> 593             signal task  0.007
+#> 683                  vision  0.007
+#> 102              congruency  0.006
+#> 142           discriminated  0.006
+#> 155             distractors  0.006
+#> 177                  eating  0.006
 #> 182                 elderly  0.006
-#> 211              expectancy  0.006
-#> 239                feelings  0.006
-#> 247                flexible  0.006
-#> 319                 learned  0.006
-#> 342                matching  0.006
-#> 345                     mci  0.006
-#> 359             mentalizing  0.006
-#> 396                  muscle  0.006
-#> 412    network connectivity  0.006
-#> 420         neutral stimuli  0.006
-#> 478                positive  0.006
-#> 520          rehabilitation  0.006
-#> 544     reward anticipation  0.006
-#> 555                   rules  0.006
-#> 42                      asd  0.005
-#> 44        attention deficit  0.005
-#> 53                   autism  0.005
-#> 83      cognitive emotional  0.005
-#> 87               compensate  0.005
-#> 96                  concept  0.005
-#> 192                emotions  0.005
-#> 207               executive  0.005
-#> 216               expressed  0.005
-#> 253                    foot  0.005
-#> 255                gambling  0.005
-#> 256                    game  0.005
-#> 257                    gaze  0.005
-#> 262           goal directed  0.005
-#> 271                 hearing  0.005
-#> 275           hyperactivity  0.005
-#> 299             intentional  0.005
-#> 379              motivation  0.005
-#> 386               motor pre  0.005
-#> 422                    nogo  0.005
-#> 443                   order  0.005
-#> 513               recognize  0.005
-#> 533          response times  0.005
-#> 547                  rhythm  0.005
-#> 554                    rule  0.005
-#> 582           sensory motor  0.005
-#> 595                   sleep  0.005
-#> 624              strategies  0.005
-#> 65                  beliefs  0.004
-#> 80             chronic pain  0.004
-#> 321           learning task  0.004
-#> 324                  letter  0.004
-#> 343           matching task  0.004
-#> 399               musicians  0.004
+#> 210     executive functions  0.006
+#> 217              expression  0.006
+#> 290            index finger  0.006
+#> 386               motor pre  0.006
+#> 453         passive viewing  0.006
+#> 490              production  0.006
+#> 498              punishment  0.006
+#> 532           response time  0.006
+#> 572         semantic memory  0.006
+#> 586               serotonin  0.006
+#> 619       speech production  0.006
+#> 639                symbolic  0.006
+#> 693           visual stream  0.006
+#> 698              visuomotor  0.006
+#> 709          working memory  0.006
+#> 1                 abilities  0.005
+#> 12                 addition  0.005
+#> 18                    adult  0.005
+#> 23                  affects  0.005
+#> 35             anticipatory  0.005
+#> 109         control network  0.005
+#> 132          detection task  0.005
+#> 170                 driving  0.005
+#> 209      executive function  0.005
+#> 215                explicit  0.005
+#> 224           eye movements  0.005
+#> 289             incongruent  0.005
+#> 356             memory test  0.005
+#> 404                  nature  0.005
+#> 430               numerical  0.005
+#> 462              perceptual  0.005
+#> 494         psychopathology  0.005
+#> 508               reasoning  0.005
+#> 521               rehearsal  0.005
+#> 522           reinforcement  0.005
+#> 545               rewarding  0.005
+#> 549                    risk  0.005
+#> 603                socially  0.005
+#> 646                   taste  0.005
+#> 664                    true  0.005
+#> 45        attention network  0.004
+#> 100                conflict  0.004
+#> 110                 craving  0.004
+#> 162          domain general  0.004
+#> 189       emotional stimuli  0.004
+#> 268                   hands  0.004
+#> 282              impairment  0.004
+#> 308           judgment task  0.004
+#> 331                  limbic  0.004
+#> 357                     men  0.004
+#> 368                mnemonic  0.004
+#> 370      monetary incentive  0.004
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 #> 17                  adopted  0.001
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 #> 334               listening  0.001
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-#> 504                    read  0.001
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-#> 618       speech perception  0.001
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 #> 658                   touch  0.001
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 #> 11                addiction  0.000
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-#> 596                 smokers -0.017
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-#> 536           resting state -0.036
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+#> 397                   music -0.003
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+#> 520          rehabilitation -0.003
+#> 540                reversal -0.003
+#> 564               sclerosis -0.003
+#> 573            semantically -0.003
+#>  [ reached 'max' / getOption("max.print") -- omitted 215 rows ]