From 40f282b7f2c3417714a4acc1e7d19f513937c6f3 Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Mon, 20 May 2024 17:04:46 +0200 Subject: [PATCH] MAINT: update pip constraints and pre-commit (#265) * MAINT: clean up `variables` in Conda config --------- Co-authored-by: GitHub --- .constraints/py3.10.txt | 113 +++++++++++++++++++++------------------- .constraints/py3.11.txt | 111 ++++++++++++++++++++------------------- .constraints/py3.12.txt | 111 ++++++++++++++++++++------------------- .constraints/py3.7.txt | 24 ++++----- .constraints/py3.8.txt | 90 ++++++++++++++++---------------- .constraints/py3.9.txt | 111 ++++++++++++++++++++------------------- .pre-commit-config.yaml | 12 ++--- environment.yml | 4 +- 8 files changed, 294 insertions(+), 282 deletions(-) diff --git a/.constraints/py3.10.txt b/.constraints/py3.10.txt index c5db774e..cce3b3e6 100644 --- a/.constraints/py3.10.txt +++ b/.constraints/py3.10.txt @@ -1,6 +1,6 @@ # This file was autogenerated by uv via the following command: # uv pip compile pyproject.toml -o .constraints/py3.10.txt --all-extras --no-annotate --python-version=3.10 --no-emit-package setuptools -accessible-pygments==0.0.4 +accessible-pygments==0.0.5 alabaster==0.7.16 anyio==4.3.0 argon2-cffi==23.1.0 @@ -9,9 +9,9 @@ arrow==1.3.0 asttokens==2.4.1 async-lru==2.0.4 attrs==23.2.0 -babel==2.14.0 +babel==2.15.0 beautifulsoup4==4.12.3 -black==24.3.0 +black==24.4.2 bleach==6.1.0 cachetools==5.3.3 cattrs==23.2.3 @@ -23,18 +23,18 @@ charset-normalizer==3.3.2 click==8.1.7 colorama==0.4.6 comm==0.2.2 -coverage==7.4.4 +coverage==7.5.1 debugpy==1.8.1 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.8 docstring-to-markdown==0.15 -docutils==0.20.1 -exceptiongroup==1.2.0 -execnet==2.1.0 +docutils==0.21.2 +exceptiongroup==1.2.1 +execnet==2.1.1 executing==2.0.1 fastjsonschema==2.19.1 -filelock==3.13.3 +filelock==3.14.0 fqdn==1.5.1 gitdb==4.0.11 gitpython==3.1.43 @@ -45,53 +45,52 @@ h11==0.14.0 hepunits==2.3.3 httpcore==1.0.5 httpx==0.27.0 -identify==2.5.35 -idna==3.6 +identify==2.5.36 +idna==3.7 imagesize==1.4.1 importlib-metadata==7.1.0 iniconfig==2.0.0 ipykernel==6.29.4 -ipython==8.23.0 +ipython==8.24.0 ipywidgets==8.1.2 isoduration==20.11.0 isort==5.13.2 jedi==0.19.1 -jinja2==3.1.3 -json5==0.9.24 +jinja2==3.1.4 +json5==0.9.25 jsonpointer==2.4 -jsonschema==4.21.1 +jsonschema==4.22.0 jsonschema-specifications==2023.12.1 jupyter-cache==1.0.0 jupyter-client==8.6.1 jupyter-core==5.7.2 jupyter-events==0.10.0 -jupyter-lsp==2.2.4 -jupyter-server==2.13.0 +jupyter-lsp==2.2.5 +jupyter-server==2.14.0 jupyter-server-mathjax==0.2.6 jupyter-server-terminals==0.5.3 -jupyterlab==4.1.5 +jupyterlab==4.2.0 jupyterlab-code-formatter==2.2.1 -jupyterlab-git==0.50.0 +jupyterlab-git==0.50.1 jupyterlab-lsp==5.1.0 -jupyterlab-myst==2.3.2 +jupyterlab-myst==2.4.2 jupyterlab-pygments==0.3.0 -jupyterlab-server==2.25.4 +jupyterlab-server==2.27.1 jupyterlab-widgets==3.0.10 latexcodec==3.0.0 -livereload==2.6.3 lsprotocol==2023.0.1 markdown-it-py==3.0.0 markupsafe==2.1.5 -matplotlib-inline==0.1.6 -mdit-py-plugins==0.4.0 +matplotlib-inline==0.1.7 +mdit-py-plugins==0.4.1 mdurl==0.1.2 mistune==3.0.2 -mypy==1.9.0 +mypy==1.10.0 mypy-extensions==1.0.0 -myst-nb==1.0.0 -myst-parser==2.0.0 +myst-nb==1.1.0 +myst-parser==3.0.1 nbclient==0.6.8 -nbconvert==7.16.3 +nbconvert==7.16.4 nbdime==4.0.1 nbformat==5.10.4 nbmake==1.5.3 @@ -102,12 +101,12 @@ overrides==7.7.0 packaging==24.0 pandocfilters==1.5.1 parso==0.8.4 -particle==0.23.1 +particle==0.24.0 pathspec==0.12.1 pexpect==4.9.0 -platformdirs==4.2.0 -pluggy==1.4.0 -pre-commit==3.7.0 +platformdirs==4.2.2 +pluggy==1.5.0 +pre-commit==3.7.1 prometheus-client==0.20.0 prompt-toolkit==3.0.43 psutil==5.9.8 @@ -118,40 +117,40 @@ pybtex-docutils==1.0.3 pycparser==2.22 pydata-sphinx-theme==0.15.2 pydot==1.4.2 -pygments==2.17.2 +pygments==2.18.0 pyparsing==3.1.2 pyproject-api==1.6.1 -pytest==8.1.1 +pytest==8.2.1 pytest-cov==5.0.0 pytest-profiling==1.7.0 -pytest-xdist==3.5.0 -python-constraint==1.3.1 +pytest-xdist==3.6.1 +python-constraint==1.4.0 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 python-lsp-jsonrpc==1.1.2 -python-lsp-ruff==2.2.0 +python-lsp-ruff==2.2.1 python-lsp-server==1.11.0 pytoolconfig==1.3.1 pyyaml==6.0.1 -pyzmq==25.1.2 -referencing==0.34.0 +pyzmq==26.0.3 +referencing==0.35.1 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 rope==1.13.0 -rpds-py==0.18.0 -ruff==0.3.5 -send2trash==1.8.2 +rpds-py==0.18.1 +ruff==0.4.4 +send2trash==1.8.3 six==1.16.0 smmap==5.0.1 sniffio==1.3.1 snowballstemmer==2.2.0 soupsieve==2.5 -sphinx==7.2.6 -sphinx-api-relink==0.0.8 -sphinx-autobuild==2024.2.4 +sphinx==7.3.7 +sphinx-api-relink==0.0.9 +sphinx-autobuild==2024.4.16 sphinx-book-theme==1.1.2 -sphinx-codeautolink==0.15.0 +sphinx-codeautolink==0.15.1 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.5.0 @@ -167,31 +166,35 @@ sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.7 sphinxcontrib-serializinghtml==1.1.10 sphobjinv==2.3.1 -sqlalchemy==2.0.29 +sqlalchemy==2.0.30 stack-data==0.6.3 +starlette==0.37.2 tabulate==0.9.0 terminado==0.18.1 -tinycss2==1.2.1 +tinycss2==1.3.0 tomli==2.0.1 tornado==6.4 -tox==4.14.2 -tqdm==4.66.2 -traitlets==5.14.2 +tox==4.15.0 +tqdm==4.66.4 +traitlets==5.14.3 types-python-dateutil==2.9.0.20240316 types-pyyaml==6.0.12.20240311 -types-setuptools==69.2.0.20240317 +types-setuptools==69.5.0.20240519 typing-extensions==4.11.0 -ujson==5.9.0 +ujson==5.10.0 uri-template==1.3.0 urllib3==2.2.1 -virtualenv==20.25.1 +uvicorn==0.29.0 +virtualenv==20.26.2 +watchfiles==0.21.0 wcwidth==0.2.13 webcolors==1.13 webencodings==0.5.1 -websocket-client==1.7.0 +websocket-client==1.8.0 +websockets==12.0 wheel==0.43.0 widgetsnbextension==4.0.10 -zipp==3.18.1 +zipp==3.18.2 # The following packages were excluded from the output: # setuptools diff --git a/.constraints/py3.11.txt b/.constraints/py3.11.txt index 357a63f9..f6c814ea 100644 --- a/.constraints/py3.11.txt +++ b/.constraints/py3.11.txt @@ -1,6 +1,6 @@ # This file was autogenerated by uv via the following command: # uv pip compile pyproject.toml -o .constraints/py3.11.txt --all-extras --no-annotate --python-version=3.11 --no-emit-package setuptools -accessible-pygments==0.0.4 +accessible-pygments==0.0.5 alabaster==0.7.16 anyio==4.3.0 argon2-cffi==23.1.0 @@ -9,9 +9,9 @@ arrow==1.3.0 asttokens==2.4.1 async-lru==2.0.4 attrs==23.2.0 -babel==2.14.0 +babel==2.15.0 beautifulsoup4==4.12.3 -black==24.3.0 +black==24.4.2 bleach==6.1.0 cachetools==5.3.3 cattrs==23.2.3 @@ -23,17 +23,17 @@ charset-normalizer==3.3.2 click==8.1.7 colorama==0.4.6 comm==0.2.2 -coverage==7.4.4 +coverage==7.5.1 debugpy==1.8.1 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.8 docstring-to-markdown==0.15 -docutils==0.20.1 -execnet==2.1.0 +docutils==0.21.2 +execnet==2.1.1 executing==2.0.1 fastjsonschema==2.19.1 -filelock==3.13.3 +filelock==3.14.0 fqdn==1.5.1 gitdb==4.0.11 gitpython==3.1.43 @@ -44,53 +44,52 @@ h11==0.14.0 hepunits==2.3.3 httpcore==1.0.5 httpx==0.27.0 -identify==2.5.35 -idna==3.6 +identify==2.5.36 +idna==3.7 imagesize==1.4.1 importlib-metadata==7.1.0 iniconfig==2.0.0 ipykernel==6.29.4 -ipython==8.23.0 +ipython==8.24.0 ipywidgets==8.1.2 isoduration==20.11.0 isort==5.13.2 jedi==0.19.1 -jinja2==3.1.3 -json5==0.9.24 +jinja2==3.1.4 +json5==0.9.25 jsonpointer==2.4 -jsonschema==4.21.1 +jsonschema==4.22.0 jsonschema-specifications==2023.12.1 jupyter-cache==1.0.0 jupyter-client==8.6.1 jupyter-core==5.7.2 jupyter-events==0.10.0 -jupyter-lsp==2.2.4 -jupyter-server==2.13.0 +jupyter-lsp==2.2.5 +jupyter-server==2.14.0 jupyter-server-mathjax==0.2.6 jupyter-server-terminals==0.5.3 -jupyterlab==4.1.5 +jupyterlab==4.2.0 jupyterlab-code-formatter==2.2.1 -jupyterlab-git==0.50.0 +jupyterlab-git==0.50.1 jupyterlab-lsp==5.1.0 -jupyterlab-myst==2.3.2 +jupyterlab-myst==2.4.2 jupyterlab-pygments==0.3.0 -jupyterlab-server==2.25.4 +jupyterlab-server==2.27.1 jupyterlab-widgets==3.0.10 latexcodec==3.0.0 -livereload==2.6.3 lsprotocol==2023.0.1 markdown-it-py==3.0.0 markupsafe==2.1.5 -matplotlib-inline==0.1.6 -mdit-py-plugins==0.4.0 +matplotlib-inline==0.1.7 +mdit-py-plugins==0.4.1 mdurl==0.1.2 mistune==3.0.2 -mypy==1.9.0 +mypy==1.10.0 mypy-extensions==1.0.0 -myst-nb==1.0.0 -myst-parser==2.0.0 +myst-nb==1.1.0 +myst-parser==3.0.1 nbclient==0.6.8 -nbconvert==7.16.3 +nbconvert==7.16.4 nbdime==4.0.1 nbformat==5.10.4 nbmake==1.5.3 @@ -101,12 +100,12 @@ overrides==7.7.0 packaging==24.0 pandocfilters==1.5.1 parso==0.8.4 -particle==0.23.1 +particle==0.24.0 pathspec==0.12.1 pexpect==4.9.0 -platformdirs==4.2.0 -pluggy==1.4.0 -pre-commit==3.7.0 +platformdirs==4.2.2 +pluggy==1.5.0 +pre-commit==3.7.1 prometheus-client==0.20.0 prompt-toolkit==3.0.43 psutil==5.9.8 @@ -117,40 +116,40 @@ pybtex-docutils==1.0.3 pycparser==2.22 pydata-sphinx-theme==0.15.2 pydot==1.4.2 -pygments==2.17.2 +pygments==2.18.0 pyparsing==3.1.2 pyproject-api==1.6.1 -pytest==8.1.1 +pytest==8.2.1 pytest-cov==5.0.0 pytest-profiling==1.7.0 -pytest-xdist==3.5.0 -python-constraint==1.3.1 +pytest-xdist==3.6.1 +python-constraint==1.4.0 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 python-lsp-jsonrpc==1.1.2 -python-lsp-ruff==2.2.0 +python-lsp-ruff==2.2.1 python-lsp-server==1.11.0 pytoolconfig==1.3.1 pyyaml==6.0.1 -pyzmq==25.1.2 -referencing==0.34.0 +pyzmq==26.0.3 +referencing==0.35.1 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 rope==1.13.0 -rpds-py==0.18.0 -ruff==0.3.5 -send2trash==1.8.2 +rpds-py==0.18.1 +ruff==0.4.4 +send2trash==1.8.3 six==1.16.0 smmap==5.0.1 sniffio==1.3.1 snowballstemmer==2.2.0 soupsieve==2.5 -sphinx==7.2.6 -sphinx-api-relink==0.0.8 -sphinx-autobuild==2024.2.4 +sphinx==7.3.7 +sphinx-api-relink==0.0.9 +sphinx-autobuild==2024.4.16 sphinx-book-theme==1.1.2 -sphinx-codeautolink==0.15.0 +sphinx-codeautolink==0.15.1 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.5.0 @@ -166,30 +165,34 @@ sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.7 sphinxcontrib-serializinghtml==1.1.10 sphobjinv==2.3.1 -sqlalchemy==2.0.29 +sqlalchemy==2.0.30 stack-data==0.6.3 +starlette==0.37.2 tabulate==0.9.0 terminado==0.18.1 -tinycss2==1.2.1 +tinycss2==1.3.0 tornado==6.4 -tox==4.14.2 -tqdm==4.66.2 -traitlets==5.14.2 +tox==4.15.0 +tqdm==4.66.4 +traitlets==5.14.3 types-python-dateutil==2.9.0.20240316 types-pyyaml==6.0.12.20240311 -types-setuptools==69.2.0.20240317 +types-setuptools==69.5.0.20240519 typing-extensions==4.11.0 -ujson==5.9.0 +ujson==5.10.0 uri-template==1.3.0 urllib3==2.2.1 -virtualenv==20.25.1 +uvicorn==0.29.0 +virtualenv==20.26.2 +watchfiles==0.21.0 wcwidth==0.2.13 webcolors==1.13 webencodings==0.5.1 -websocket-client==1.7.0 +websocket-client==1.8.0 +websockets==12.0 wheel==0.43.0 widgetsnbextension==4.0.10 -zipp==3.18.1 +zipp==3.18.2 # The following packages were excluded from the output: # setuptools diff --git a/.constraints/py3.12.txt b/.constraints/py3.12.txt index 63541747..5fa9349d 100644 --- a/.constraints/py3.12.txt +++ b/.constraints/py3.12.txt @@ -1,6 +1,6 @@ # This file was autogenerated by uv via the following command: # uv pip compile pyproject.toml -o .constraints/py3.12.txt --all-extras --no-annotate --python-version=3.12 --no-emit-package setuptools -accessible-pygments==0.0.4 +accessible-pygments==0.0.5 alabaster==0.7.16 anyio==4.3.0 argon2-cffi==23.1.0 @@ -9,9 +9,9 @@ arrow==1.3.0 asttokens==2.4.1 async-lru==2.0.4 attrs==23.2.0 -babel==2.14.0 +babel==2.15.0 beautifulsoup4==4.12.3 -black==24.3.0 +black==24.4.2 bleach==6.1.0 cachetools==5.3.3 cattrs==23.2.3 @@ -23,17 +23,17 @@ charset-normalizer==3.3.2 click==8.1.7 colorama==0.4.6 comm==0.2.2 -coverage==7.4.4 +coverage==7.5.1 debugpy==1.8.1 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.8 docstring-to-markdown==0.15 -docutils==0.20.1 -execnet==2.1.0 +docutils==0.21.2 +execnet==2.1.1 executing==2.0.1 fastjsonschema==2.19.1 -filelock==3.13.3 +filelock==3.14.0 fqdn==1.5.1 gitdb==4.0.11 gitpython==3.1.43 @@ -44,53 +44,52 @@ h11==0.14.0 hepunits==2.3.3 httpcore==1.0.5 httpx==0.27.0 -identify==2.5.35 -idna==3.6 +identify==2.5.36 +idna==3.7 imagesize==1.4.1 importlib-metadata==7.1.0 iniconfig==2.0.0 ipykernel==6.29.4 -ipython==8.23.0 +ipython==8.24.0 ipywidgets==8.1.2 isoduration==20.11.0 isort==5.13.2 jedi==0.19.1 -jinja2==3.1.3 -json5==0.9.24 +jinja2==3.1.4 +json5==0.9.25 jsonpointer==2.4 -jsonschema==4.21.1 +jsonschema==4.22.0 jsonschema-specifications==2023.12.1 jupyter-cache==1.0.0 jupyter-client==8.6.1 jupyter-core==5.7.2 jupyter-events==0.10.0 -jupyter-lsp==2.2.4 -jupyter-server==2.13.0 +jupyter-lsp==2.2.5 +jupyter-server==2.14.0 jupyter-server-mathjax==0.2.6 jupyter-server-terminals==0.5.3 -jupyterlab==4.1.5 +jupyterlab==4.2.0 jupyterlab-code-formatter==2.2.1 -jupyterlab-git==0.50.0 +jupyterlab-git==0.50.1 jupyterlab-lsp==5.1.0 -jupyterlab-myst==2.3.2 +jupyterlab-myst==2.4.2 jupyterlab-pygments==0.3.0 -jupyterlab-server==2.25.4 +jupyterlab-server==2.27.1 jupyterlab-widgets==3.0.10 latexcodec==3.0.0 -livereload==2.6.3 lsprotocol==2023.0.1 markdown-it-py==3.0.0 markupsafe==2.1.5 -matplotlib-inline==0.1.6 -mdit-py-plugins==0.4.0 +matplotlib-inline==0.1.7 +mdit-py-plugins==0.4.1 mdurl==0.1.2 mistune==3.0.2 -mypy==1.9.0 +mypy==1.10.0 mypy-extensions==1.0.0 -myst-nb==1.0.0 -myst-parser==2.0.0 +myst-nb==1.1.0 +myst-parser==3.0.1 nbclient==0.6.8 -nbconvert==7.16.3 +nbconvert==7.16.4 nbdime==4.0.1 nbformat==5.10.4 nbmake==1.5.3 @@ -101,12 +100,12 @@ overrides==7.7.0 packaging==24.0 pandocfilters==1.5.1 parso==0.8.4 -particle==0.23.1 +particle==0.24.0 pathspec==0.12.1 pexpect==4.9.0 -platformdirs==4.2.0 -pluggy==1.4.0 -pre-commit==3.7.0 +platformdirs==4.2.2 +pluggy==1.5.0 +pre-commit==3.7.1 prometheus-client==0.20.0 prompt-toolkit==3.0.43 psutil==5.9.8 @@ -117,40 +116,40 @@ pybtex-docutils==1.0.3 pycparser==2.22 pydata-sphinx-theme==0.15.2 pydot==1.4.2 -pygments==2.17.2 +pygments==2.18.0 pyparsing==3.1.2 pyproject-api==1.6.1 -pytest==8.1.1 +pytest==8.2.1 pytest-cov==5.0.0 pytest-profiling==1.7.0 -pytest-xdist==3.5.0 -python-constraint==1.3.1 +pytest-xdist==3.6.1 +python-constraint==1.4.0 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 python-lsp-jsonrpc==1.1.2 -python-lsp-ruff==2.2.0 +python-lsp-ruff==2.2.1 python-lsp-server==1.11.0 pytoolconfig==1.3.1 pyyaml==6.0.1 -pyzmq==25.1.2 -referencing==0.34.0 +pyzmq==26.0.3 +referencing==0.35.1 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 rope==1.13.0 -rpds-py==0.18.0 -ruff==0.3.5 -send2trash==1.8.2 +rpds-py==0.18.1 +ruff==0.4.4 +send2trash==1.8.3 six==1.16.0 smmap==5.0.1 sniffio==1.3.1 snowballstemmer==2.2.0 soupsieve==2.5 -sphinx==7.2.6 -sphinx-api-relink==0.0.8 -sphinx-autobuild==2024.2.4 +sphinx==7.3.7 +sphinx-api-relink==0.0.9 +sphinx-autobuild==2024.4.16 sphinx-book-theme==1.1.2 -sphinx-codeautolink==0.15.0 +sphinx-codeautolink==0.15.1 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.5.0 @@ -166,30 +165,34 @@ sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.7 sphinxcontrib-serializinghtml==1.1.10 sphobjinv==2.3.1 -sqlalchemy==2.0.29 +sqlalchemy==2.0.30 stack-data==0.6.3 +starlette==0.37.2 tabulate==0.9.0 terminado==0.18.1 -tinycss2==1.2.1 +tinycss2==1.3.0 tornado==6.4 -tox==4.14.2 -tqdm==4.66.2 -traitlets==5.14.2 +tox==4.15.0 +tqdm==4.66.4 +traitlets==5.14.3 types-python-dateutil==2.9.0.20240316 types-pyyaml==6.0.12.20240311 -types-setuptools==69.2.0.20240317 +types-setuptools==69.5.0.20240519 typing-extensions==4.11.0 -ujson==5.9.0 +ujson==5.10.0 uri-template==1.3.0 urllib3==2.2.1 -virtualenv==20.25.1 +uvicorn==0.29.0 +virtualenv==20.26.2 +watchfiles==0.21.0 wcwidth==0.2.13 webcolors==1.13 webencodings==0.5.1 -websocket-client==1.7.0 +websocket-client==1.8.0 +websockets==12.0 wheel==0.43.0 widgetsnbextension==4.0.10 -zipp==3.18.1 +zipp==3.18.2 # The following packages were excluded from the output: # setuptools diff --git a/.constraints/py3.7.txt b/.constraints/py3.7.txt index e75d2e8a..8b831222 100644 --- a/.constraints/py3.7.txt +++ b/.constraints/py3.7.txt @@ -33,7 +33,7 @@ distlib==0.3.8 docstring-to-markdown==0.15 docutils==0.17.1 entrypoints==0.4 -exceptiongroup==1.2.0 +exceptiongroup==1.2.1 execnet==2.0.2 fastjsonschema==2.19.1 filelock==3.12.2 @@ -45,7 +45,7 @@ graphviz==0.20.1 greenlet==3.0.3 hepunits==2.3.3 identify==2.5.24 -idna==3.6 +idna==3.7 imagesize==1.4.1 importlib-metadata==6.7.0 importlib-resources==5.12.0 @@ -57,7 +57,7 @@ ipywidgets==8.1.2 isoduration==20.11.0 isort==5.11.5 jedi==0.18.2 -jinja2==3.1.3 +jinja2==3.1.4 json5==0.9.16 jsonpointer==2.4 jsonschema==4.17.3 @@ -67,7 +67,7 @@ jupyter-core==4.12.0 jupyter-events==0.6.3 jupyter-lsp==1.5.1 jupyter-server==1.24.0 -jupyter-server-fileid==0.9.1 +jupyter-server-fileid==0.9.2 jupyter-server-mathjax==0.2.6 jupyter-server-ydoc==0.8.0 jupyter-ydoc==0.2.5 @@ -100,7 +100,7 @@ nbformat==5.8.0 nbmake==1.2.1 nest-asyncio==1.6.0 nodeenv==1.8.0 -notebook==6.5.6 +notebook==6.5.7 notebook-shim==0.2.4 packaging==24.0 pandocfilters==1.5.1 @@ -131,7 +131,7 @@ pytest==7.4.4 pytest-cov==4.1.0 pytest-profiling==1.7.0 pytest-xdist==3.5.0 -python-constraint==1.3.1 +python-constraint==1.4.0 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 python-lsp-jsonrpc==1.0.0 @@ -140,23 +140,23 @@ python-lsp-server==1.7.4 pytoolconfig==1.3.0 pytz==2024.1 pyyaml==6.0.1 -pyzmq==24.0.1 +pyzmq==26.0.3 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 rope==1.9.0 ruff==0.1.15 -send2trash==1.8.2 +send2trash==1.8.3 six==1.16.0 smmap==5.0.1 sniffio==1.3.1 snowballstemmer==2.2.0 soupsieve==2.4.1 sphinx==5.3.0 -sphinx-api-relink==0.0.8 +sphinx-api-relink==0.0.9 sphinx-autobuild==2021.3.14 sphinx-book-theme==1.0.1 -sphinx-codeautolink==0.15.0 +sphinx-codeautolink==0.15.1 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.4.1 @@ -179,7 +179,7 @@ tinycss2==1.2.1 tomli==2.0.1 tornado==6.2 tox==4.8.0 -tqdm==4.66.2 +tqdm==4.66.4 traitlets==5.9.0 typed-ast==1.5.5 types-pyyaml==6.0.12.12 @@ -188,7 +188,7 @@ typing-extensions==4.7.1 ujson==5.7.0 uri-template==1.3.0 urllib3==2.0.7 -virtualenv==20.25.1 +virtualenv==20.26.2 wcwidth==0.2.13 webcolors==1.13 webencodings==0.5.1 diff --git a/.constraints/py3.8.txt b/.constraints/py3.8.txt index 9d656a44..f23e23c3 100644 --- a/.constraints/py3.8.txt +++ b/.constraints/py3.8.txt @@ -9,10 +9,10 @@ arrow==1.3.0 asttokens==2.4.1 async-lru==2.0.4 attrs==23.2.0 -babel==2.14.0 +babel==2.15.0 backcall==0.2.0 beautifulsoup4==4.12.3 -black==24.3.0 +black==24.4.2 bleach==6.1.0 cachetools==5.3.3 cattrs==23.2.3 @@ -24,18 +24,18 @@ charset-normalizer==3.3.2 click==8.1.7 colorama==0.4.6 comm==0.2.2 -coverage==7.4.4 +coverage==7.5.1 debugpy==1.8.1 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.8 docstring-to-markdown==0.15 docutils==0.17.1 -exceptiongroup==1.2.0 -execnet==2.1.0 +exceptiongroup==1.2.1 +execnet==2.1.1 executing==2.0.1 fastjsonschema==2.19.1 -filelock==3.13.3 +filelock==3.14.0 fqdn==1.5.1 gitdb==4.0.11 gitpython==3.1.43 @@ -46,8 +46,8 @@ h11==0.14.0 hepunits==2.3.3 httpcore==1.0.5 httpx==0.27.0 -identify==2.5.35 -idna==3.6 +identify==2.5.36 +idna==3.7 imagesize==1.4.1 importlib-metadata==7.1.0 importlib-resources==6.4.0 @@ -58,42 +58,42 @@ ipywidgets==8.1.2 isoduration==20.11.0 isort==5.13.2 jedi==0.19.1 -jinja2==3.1.3 -json5==0.9.24 +jinja2==3.1.4 +json5==0.9.25 jsonpointer==2.4 -jsonschema==4.21.1 +jsonschema==4.22.0 jsonschema-specifications==2023.12.1 jupyter-cache==0.6.1 jupyter-client==8.6.1 jupyter-core==5.7.2 jupyter-events==0.10.0 -jupyter-lsp==2.2.4 -jupyter-server==2.13.0 +jupyter-lsp==2.2.5 +jupyter-server==2.14.0 jupyter-server-mathjax==0.2.6 jupyter-server-terminals==0.5.3 -jupyterlab==4.1.5 +jupyterlab==4.2.0 jupyterlab-code-formatter==2.2.1 -jupyterlab-git==0.50.0 +jupyterlab-git==0.50.1 jupyterlab-lsp==5.1.0 -jupyterlab-myst==2.3.2 +jupyterlab-myst==2.4.2 jupyterlab-pygments==0.3.0 -jupyterlab-server==2.25.4 +jupyterlab-server==2.27.1 jupyterlab-widgets==3.0.10 latexcodec==3.0.0 livereload==2.6.3 lsprotocol==2023.0.1 markdown-it-py==2.2.0 markupsafe==2.1.5 -matplotlib-inline==0.1.6 +matplotlib-inline==0.1.7 mdit-py-plugins==0.3.5 mdurl==0.1.2 mistune==3.0.2 -mypy==1.9.0 +mypy==1.10.0 mypy-extensions==1.0.0 myst-nb==0.17.2 myst-parser==0.18.1 nbclient==0.6.8 -nbconvert==7.16.3 +nbconvert==7.16.4 nbdime==4.0.1 nbformat==5.10.4 nbmake==1.5.3 @@ -104,13 +104,13 @@ overrides==7.7.0 packaging==24.0 pandocfilters==1.5.1 parso==0.8.4 -particle==0.23.1 +particle==0.24.0 pathspec==0.12.1 pexpect==4.9.0 pickleshare==0.7.5 pkgutil-resolve-name==1.3.10 -platformdirs==4.2.0 -pluggy==1.4.0 +platformdirs==4.2.2 +pluggy==1.5.0 pre-commit==3.5.0 prometheus-client==0.20.0 prompt-toolkit==3.0.43 @@ -122,41 +122,41 @@ pybtex-docutils==1.0.3 pycparser==2.22 pydata-sphinx-theme==0.14.4 pydot==1.4.2 -pygments==2.17.2 +pygments==2.18.0 pyparsing==3.1.2 pyproject-api==1.6.1 -pytest==8.1.1 +pytest==8.2.1 pytest-cov==5.0.0 pytest-profiling==1.7.0 -pytest-xdist==3.5.0 -python-constraint==1.3.1 +pytest-xdist==3.6.1 +python-constraint==1.4.0 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 python-lsp-jsonrpc==1.1.2 -python-lsp-ruff==2.2.0 +python-lsp-ruff==2.2.1 python-lsp-server==1.11.0 pytoolconfig==1.3.1 pytz==2024.1 pyyaml==6.0.1 -pyzmq==25.1.2 -referencing==0.34.0 +pyzmq==26.0.3 +referencing==0.35.1 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 rope==1.13.0 -rpds-py==0.18.0 -ruff==0.3.5 -send2trash==1.8.2 +rpds-py==0.18.1 +ruff==0.4.4 +send2trash==1.8.3 six==1.16.0 smmap==5.0.1 sniffio==1.3.1 snowballstemmer==2.2.0 soupsieve==2.5 sphinx==5.3.0 -sphinx-api-relink==0.0.8 +sphinx-api-relink==0.0.9 sphinx-autobuild==2021.3.14 sphinx-book-theme==1.0.1 -sphinx-codeautolink==0.15.0 +sphinx-codeautolink==0.15.1 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.5.0 @@ -172,31 +172,31 @@ sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.3 sphinxcontrib-serializinghtml==1.1.5 sphobjinv==2.3.1 -sqlalchemy==2.0.29 +sqlalchemy==2.0.30 stack-data==0.6.3 tabulate==0.9.0 terminado==0.18.1 -tinycss2==1.2.1 +tinycss2==1.3.0 tomli==2.0.1 tornado==6.4 -tox==4.14.2 -tqdm==4.66.2 -traitlets==5.14.2 +tox==4.15.0 +tqdm==4.66.4 +traitlets==5.14.3 types-python-dateutil==2.9.0.20240316 types-pyyaml==6.0.12.20240311 -types-setuptools==69.2.0.20240317 +types-setuptools==69.5.0.20240519 typing-extensions==4.11.0 -ujson==5.9.0 +ujson==5.10.0 uri-template==1.3.0 urllib3==2.2.1 -virtualenv==20.25.1 +virtualenv==20.26.2 wcwidth==0.2.13 webcolors==1.13 webencodings==0.5.1 -websocket-client==1.7.0 +websocket-client==1.8.0 wheel==0.43.0 widgetsnbextension==4.0.10 -zipp==3.18.1 +zipp==3.18.2 # The following packages were excluded from the output: # setuptools diff --git a/.constraints/py3.9.txt b/.constraints/py3.9.txt index dae63c78..1f0cae72 100644 --- a/.constraints/py3.9.txt +++ b/.constraints/py3.9.txt @@ -1,6 +1,6 @@ # This file was autogenerated by uv via the following command: # uv pip compile pyproject.toml -o .constraints/py3.9.txt --all-extras --no-annotate --python-version=3.9 --no-emit-package setuptools -accessible-pygments==0.0.4 +accessible-pygments==0.0.5 alabaster==0.7.16 anyio==4.3.0 argon2-cffi==23.1.0 @@ -9,9 +9,9 @@ arrow==1.3.0 asttokens==2.4.1 async-lru==2.0.4 attrs==23.2.0 -babel==2.14.0 +babel==2.15.0 beautifulsoup4==4.12.3 -black==24.3.0 +black==24.4.2 bleach==6.1.0 cachetools==5.3.3 cattrs==23.2.3 @@ -23,18 +23,18 @@ charset-normalizer==3.3.2 click==8.1.7 colorama==0.4.6 comm==0.2.2 -coverage==7.4.4 +coverage==7.5.1 debugpy==1.8.1 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.8 docstring-to-markdown==0.15 -docutils==0.20.1 -exceptiongroup==1.2.0 -execnet==2.1.0 +docutils==0.21.2 +exceptiongroup==1.2.1 +execnet==2.1.1 executing==2.0.1 fastjsonschema==2.19.1 -filelock==3.13.3 +filelock==3.14.0 fqdn==1.5.1 gitdb==4.0.11 gitpython==3.1.43 @@ -45,8 +45,8 @@ h11==0.14.0 hepunits==2.3.3 httpcore==1.0.5 httpx==0.27.0 -identify==2.5.35 -idna==3.6 +identify==2.5.36 +idna==3.7 imagesize==1.4.1 importlib-metadata==7.1.0 iniconfig==2.0.0 @@ -56,42 +56,41 @@ ipywidgets==8.1.2 isoduration==20.11.0 isort==5.13.2 jedi==0.19.1 -jinja2==3.1.3 -json5==0.9.24 +jinja2==3.1.4 +json5==0.9.25 jsonpointer==2.4 -jsonschema==4.21.1 +jsonschema==4.22.0 jsonschema-specifications==2023.12.1 jupyter-cache==1.0.0 jupyter-client==8.6.1 jupyter-core==5.7.2 jupyter-events==0.10.0 -jupyter-lsp==2.2.4 -jupyter-server==2.13.0 +jupyter-lsp==2.2.5 +jupyter-server==2.14.0 jupyter-server-mathjax==0.2.6 jupyter-server-terminals==0.5.3 -jupyterlab==4.1.5 +jupyterlab==4.2.0 jupyterlab-code-formatter==2.2.1 -jupyterlab-git==0.50.0 +jupyterlab-git==0.50.1 jupyterlab-lsp==5.1.0 -jupyterlab-myst==2.3.2 +jupyterlab-myst==2.4.2 jupyterlab-pygments==0.3.0 -jupyterlab-server==2.25.4 +jupyterlab-server==2.27.1 jupyterlab-widgets==3.0.10 latexcodec==3.0.0 -livereload==2.6.3 lsprotocol==2023.0.1 markdown-it-py==3.0.0 markupsafe==2.1.5 -matplotlib-inline==0.1.6 -mdit-py-plugins==0.4.0 +matplotlib-inline==0.1.7 +mdit-py-plugins==0.4.1 mdurl==0.1.2 mistune==3.0.2 -mypy==1.9.0 +mypy==1.10.0 mypy-extensions==1.0.0 -myst-nb==1.0.0 -myst-parser==2.0.0 +myst-nb==1.1.0 +myst-parser==3.0.1 nbclient==0.6.8 -nbconvert==7.16.3 +nbconvert==7.16.4 nbdime==4.0.1 nbformat==5.10.4 nbmake==1.5.3 @@ -102,12 +101,12 @@ overrides==7.7.0 packaging==24.0 pandocfilters==1.5.1 parso==0.8.4 -particle==0.23.1 +particle==0.24.0 pathspec==0.12.1 pexpect==4.9.0 -platformdirs==4.2.0 -pluggy==1.4.0 -pre-commit==3.7.0 +platformdirs==4.2.2 +pluggy==1.5.0 +pre-commit==3.7.1 prometheus-client==0.20.0 prompt-toolkit==3.0.43 psutil==5.9.8 @@ -118,40 +117,40 @@ pybtex-docutils==1.0.3 pycparser==2.22 pydata-sphinx-theme==0.15.2 pydot==1.4.2 -pygments==2.17.2 +pygments==2.18.0 pyparsing==3.1.2 pyproject-api==1.6.1 -pytest==8.1.1 +pytest==8.2.1 pytest-cov==5.0.0 pytest-profiling==1.7.0 -pytest-xdist==3.5.0 -python-constraint==1.3.1 +pytest-xdist==3.6.1 +python-constraint==1.4.0 python-dateutil==2.9.0.post0 python-json-logger==2.0.7 python-lsp-jsonrpc==1.1.2 -python-lsp-ruff==2.2.0 +python-lsp-ruff==2.2.1 python-lsp-server==1.11.0 pytoolconfig==1.3.1 pyyaml==6.0.1 -pyzmq==25.1.2 -referencing==0.34.0 +pyzmq==26.0.3 +referencing==0.35.1 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 rope==1.13.0 -rpds-py==0.18.0 -ruff==0.3.5 -send2trash==1.8.2 +rpds-py==0.18.1 +ruff==0.4.4 +send2trash==1.8.3 six==1.16.0 smmap==5.0.1 sniffio==1.3.1 snowballstemmer==2.2.0 soupsieve==2.5 -sphinx==7.2.6 -sphinx-api-relink==0.0.8 -sphinx-autobuild==2024.2.4 +sphinx==7.3.7 +sphinx-api-relink==0.0.9 +sphinx-autobuild==2024.4.16 sphinx-book-theme==1.1.2 -sphinx-codeautolink==0.15.0 +sphinx-codeautolink==0.15.1 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.5.0 @@ -167,31 +166,35 @@ sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.7 sphinxcontrib-serializinghtml==1.1.10 sphobjinv==2.3.1 -sqlalchemy==2.0.29 +sqlalchemy==2.0.30 stack-data==0.6.3 +starlette==0.37.2 tabulate==0.9.0 terminado==0.18.1 -tinycss2==1.2.1 +tinycss2==1.3.0 tomli==2.0.1 tornado==6.4 -tox==4.14.2 -tqdm==4.66.2 -traitlets==5.14.2 +tox==4.15.0 +tqdm==4.66.4 +traitlets==5.14.3 types-python-dateutil==2.9.0.20240316 types-pyyaml==6.0.12.20240311 -types-setuptools==69.2.0.20240317 +types-setuptools==69.5.0.20240519 typing-extensions==4.11.0 -ujson==5.9.0 +ujson==5.10.0 uri-template==1.3.0 urllib3==2.2.1 -virtualenv==20.25.1 +uvicorn==0.29.0 +virtualenv==20.26.2 +watchfiles==0.21.0 wcwidth==0.2.13 webcolors==1.13 webencodings==0.5.1 -websocket-client==1.7.0 +websocket-client==1.8.0 +websockets==12.0 wheel==0.43.0 widgetsnbextension==4.0.10 -zipp==3.18.1 +zipp==3.18.2 # The following packages were excluded from the output: # setuptools diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index a2eb65a4..c5666877 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -40,7 +40,7 @@ repos: metadata.vscode - repo: https://github.com/ComPWA/policy - rev: 0.3.4 + rev: 0.3.8 hooks: - id: check-dev-files args: @@ -58,7 +58,7 @@ repos: - --extras-require=doc,viz - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.3.5 + rev: v0.4.4 hooks: - id: ruff args: [--fix] @@ -67,7 +67,7 @@ repos: types_or: [python, pyi, jupyter] - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.5.0 + rev: v4.6.0 hooks: - id: check-ast - id: check-case-conflict @@ -107,7 +107,7 @@ repos: - --in-place - repo: https://github.com/python-jsonschema/check-jsonschema - rev: 0.28.1 + rev: 0.28.3 hooks: - id: check-jsonschema name: Check CITATION.cff @@ -120,7 +120,7 @@ repos: pass_filenames: false - repo: https://github.com/streetsidesoftware/cspell-cli - rev: v8.6.1 + rev: v8.8.1 hooks: - id: cspell @@ -146,6 +146,6 @@ repos: - python - repo: https://github.com/ComPWA/mirrors-pyright - rev: v1.1.357 + rev: v1.1.363 hooks: - id: pyright diff --git a/environment.yml b/environment.yml index bb5d7b6a..866fc840 100644 --- a/environment.yml +++ b/environment.yml @@ -4,8 +4,8 @@ channels: dependencies: - python==3.9.* - pip - - graphviz # for binder + - graphviz - pip: - -c .constraints/py3.9.txt -e .[dev] variables: - PRETTIER_LEGACY_CLI: "1" + PRETTIER_LEGACY_CLI: 1