Installation failed on windows

[bpavie]

I tried to install it on windows following the instruction bu it failed:

conda env create -f dirtmu_environment_python3.yml
Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound:
  - libogg==1.3.4=h7f98852_1
  - xorg-kbproto==1.0.7=h7f98852_1002
  - c-ares==1.18.1=h7f98852_0
  - cffi==1.15.0=py39h4bc2ebd_0
  - libgcc-ng==11.2.0=h1d223b6_14
  - readline==8.1=h46c0cb4_0
  - python==3.9.10=h85951f9_2_cpython
  - setuptools==60.10.0=py39hf3d152e_0
  - libdeflate==1.10=h7f98852_0
  - libnsl==2.0.0=h7f98852_0
  - tornado==6.1=py39h3811e60_2
  - icu==69.1=h9c3ff4c_0
  - kiwisolver==1.4.0=py39hf939315_0
  - libuuid==2.32.1=h7f98852_1000
  - libgomp==11.2.0=h1d223b6_14
  - fontconfig==2.13.96=h8e229c2_2
  - gstreamer==1.18.5=h9f60fe5_3
  - zlib==1.2.11=h36c2ea0_1013
  - certifi==2021.10.8=py39hf3d152e_1
  - giflib==5.2.1=h36c2ea0_2
  - libiconv==1.16=h516909a_0
  - expat==2.4.7=h27087fc_0
  - _libgcc_mutex==0.1=conda_forge
  - libevent==2.1.10=h9b69904_4
  - libwebp==1.2.2=h3452ae3_0
  - krb5==1.19.3=h3790be6_0
  - pthread-stubs==0.4=h36c2ea0_1001
  - pixman==0.40.0=h36c2ea0_0
  - bzip2==1.0.8=h7f98852_4
  - xorg-renderproto==0.11.1=h7f98852_1002
  - libpq==14.2=hd57d9b9_0
  - xorg-xproto==7.0.31=h7f98852_1007
  - libbrotlienc==1.0.9=h7f98852_6
  - libxcb==1.13=h7f98852_1004
  - jpeg==9e=h7f98852_0
  - xorg-libxrender==0.9.10=h7f98852_1003
  - xz==5.2.5=h516909a_1
  - jxrlib==1.1=h7f98852_2
  - snappy==1.1.8=he1b5a44_3
  - yaml==0.2.5=h7f98852_2
  - libbrotlidec==1.0.9=h7f98852_6
  - dbus==1.13.6=h5008d03_3
  - ld_impl_linux-64==2.36.1=hea4e1c9_2
  - pandas==1.4.1=py39hde0f152_0
  - lerc==3.0=h9c3ff4c_0
  - lz4-c==1.9.3=h9c3ff4c_1
  - pyqt-impl==5.12.3=py39hde8b62d_8
  - fonttools==4.31.1=py39hb9d737c_0
  - cfitsio==4.0.0=h9a35b8e_0
  - matplotlib==3.5.1=py39hf3d152e_0
  - pcre==8.45=h9c3ff4c_0
  - keyutils==1.6.1=h166bdaf_0
  - scikit-learn==1.0.2=py39h4dfa638_0
  - matplotlib-base==3.5.1=py39h2fa2bec_0
  - gst-plugins-base==1.18.5=hf529b03_3
  - unicodedata2==14.0.0=py39h3811e60_0
  - libpng==1.6.37=h21135ba_2
  - brotli-bin==1.0.9=h7f98852_6
  - graph-tool-base==2.44=py39h8160539_2
  - pyqt5-sip==4.19.18=py39he80948d_8
  - libavif==0.9.3=h166bdaf_1
  - charls==2.3.4=h9c3ff4c_0
  - libxkbcommon==1.0.3=he3ba5ed_0
  - xorg-libice==1.0.10=h7f98852_0
  - boost-cpp==1.74.0=h6cacc03_7
  - brunsli==0.1=h9c3ff4c_0
  - gettext==0.19.8.1=h73d1719_1008
  - libgfortran-ng==11.2.0=h69a702a_14
  - tk==8.6.12=h27826a3_0
  - lcms2==2.12=hddcbb42_0
  - scipy==1.8.0=py39hee8e79c_1
  - imagecodecs==2022.2.22=py39hf577088_0
  - libssh2==1.10.0=ha56f1ee_2
  - openssl==1.1.1l=h7f98852_0
  - pyqt==5.12.3=py39hf3d152e_8
  - cairo==1.16.0=ha12eb4b_1010
  - jbig==2.1=h7f98852_2003
  - sqlite==3.37.1=h4ff8645_0
  - xorg-libxdmcp==1.1.3=h7f98852_0
  - zstd==1.5.2=ha95c52a_0
  - zfp==0.5.5=h9c3ff4c_8
  - gmp==6.2.1=h58526e2_0
  - pyyaml==6.0=py39h3811e60_3
  - qt==5.12.9=ha98a1a1_5
  - libnghttp2==1.47.0=h727a467_0
  - blosc==1.21.0=h9c3ff4c_0
  - xorg-libsm==1.2.3=hd9c2040_1000
  - cytoolz==0.11.2=py39h3811e60_1
  - libllvm13==13.0.1=hf817b99_2
  - libvorbis==1.3.7=h9c3ff4c_0
  - libaec==1.0.6=h9c3ff4c_0
  - pycairo==1.21.0=py39h0934665_0
  - xorg-xextproto==7.3.0=h7f98852_1002
  - libbrotlicommon==1.0.9=h7f98852_6
  - libedit==3.1.20191231=he28a2e2_2
  - c-blosc2==2.0.4=h5f21a17_1
  - libtiff==4.3.0=h542a066_3
  - libcblas==3.9.0=13_linux64_openblas
  - libclang==13.0.1=default_hc23dcda_0
  - numpy==1.22.3=py39h18676bf_0
  - brotli==1.0.9=h7f98852_6
  - libffi==3.4.2=h7f98852_5
  - boost==1.74.0=py39h5472131_5
  - sparsehash==2.0.4=h9c3ff4c_0
  - _openmp_mutex==4.5=1_gnu
  - pyqtchart==5.12=py39h0fcd23e_8
  - scikit-image==0.19.2=py39hde0f152_0
  - xorg-libx11==1.7.2=h7f98852_0
  - libstdcxx-ng==11.2.0=he4da1e4_14
  - zstandard==0.17.0=py39h3811e60_0
  - libev==4.33=h516909a_1
  - ca-certificates==2021.10.8=ha878542_0
  - nspr==4.32=h9c3ff4c_1
  - pywavelets==1.3.0=py39hd257fcd_0
  - liblapack==3.9.0=13_linux64_openblas
  - nss==3.74=hb5efdd6_0
  - libopenblas==0.3.18=pthreads_h8fe5266_0
  - libgfortran5==11.2.0=h5c6108e_14
  - libxml2==2.9.12=h885dcf4_1
  - libzlib==1.2.11=h36c2ea0_1013
  - openjpeg==2.4.0=hb52868f_1
  - aom==3.3.0=h27087fc_1
  - libcurl==7.82.0=h7bff187_0
  - xorg-libxau==1.0.9=h7f98852_0
  - libglib==2.70.2=h174f98d_4
  - libwebp-base==1.2.2=h7f98852_1
  - mysql-common==8.0.28=ha770c72_0
  - ncurses==6.3=h9c3ff4c_0
  - pyqtwebengine==5.12.1=py39h0fcd23e_8
  - freetype==2.10.4=h0708190_1
  - xorg-libxext==1.3.4=h7f98852_1
  - psutil==5.9.0=py39h3811e60_0
  - mysql-libs==8.0.28=hfa10184_0
  - libblas==3.9.0=13_linux64_openblas
  - alsa-lib==1.2.3=h516909a_0
  - libzopfli==1.0.3=h9c3ff4c_0
  - pillow==9.0.1=py39hae2aec6_2
  - libopus==1.3.1=h7f98852_1

I am guessing that the yml file as been generated using conda env export > dirtmu_environment_python3.yml but it generated a yml specific to a linux installation.

Also, it seems that graph-too is not available on windows, (see https://git.skewed.de/count0/graph-tool/-/wikis/installation-instructions#windows ) so I guess it will not be possible to install it on windows :-(

[wpbonelli]

Hi @bpavie thanks for the report, I was able to reproduce a similar conda error on Windows. We ought to provide a multi-platform conda environment with unfrozen dependencies, I will add one shortly.

Regarding Windows graph tool installation, yes it does seem a native install is not supported, I'd suggest either Docker or Windows Subsystem for Linux. Note that there is a preconfigured container image computationalplantscience/dirtmu hosted on Docker Hub, that is likely the easiest way to get started with DIRTmu if you are able to use Docker.