Example don't work

[Li-Alvarez]

Hi!, I have tried to run the program with the example images. Although it starts without issues, at a certain point it stops, without emitting any error logs.
I run:
python3 hairyroots.py -i sample/TAKFA3-n3-1.tif -o sample/ --id_root 3 --id_roothair 1 --id_background 2 --pixel_size 1.72 -p

Use: Ubuntu 22.4 lts, 36 core 64GB memory.

[PeterPieGH]

Hi,
the algorithm works on classified images and does not work directly on the original RGB images. Please use ilastik or another classification tool to classify all pixels into the corresponding class. Check out our workshop on Youtube: https://www.youtube.com/watch?v=fwQIPYXAaYI
You can still test the algorithm using the provided classified image sample/TAKFA3-n3-1_Classes.tiff.
I hope this helps.