pyproject.toml

[build-system]
requires = ["setuptools>=61.2"]
build-backend = "setuptools.build_meta"

[project]
name = "cardiac_mps"
version = "2024.0.0"
description = "Tools for working with caridac mps files"
authors = [{name = "Henrik Finsberg", email = "henriknf@simula.no"}]
license = {text = "LGPL-2.1"}
classifiers = [
    "License :: OSI Approved :: GNU Lesser General Public License v2 (LGPLv2)",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
]
keywords = ["action potential", "cell models", "features"]
requires-python = ">=3.7"
dependencies = [
    "ap-features",
    "imageio",
    "imageio-ffmpeg",
    "matplotlib",
    "numpy",
    "scipy",
    "tifffile",
    "typer",
    "xmltodict",
]


[project.readme]
file = "README.md"
content-type = "text/markdown"

[project.urls]
Homepage = "https://github.com/ComputationalPhysiology/mps"

[project.optional-dependencies]
dev = [
    "Sphinx",
    "black",
    "bump-my-version",
    "flake8",
    "ipython",
    "isort",
    "mypy",
    "pdbpp",
    "pip",
    "pre-commit",
    "pytest",
    "pytest-cov",
    "twine",
    "types-PyYAML",
    "wheel",
]
docs = [
    "jupyter-book",
    "jupytext",
    "sphinxcontrib-bibtex",
]
motion = ["mps-motion"]
test = [
    "pre-commit",
    "pytest",
    "pytest-cov",
]

[project.scripts]
mps = "mps.__main__:app"
mps2mp4 = "mps.__main__:run_mps2mp4"
mps-summary = "mps.__main__:run_summary"
mps-analyze = "mps.__main__:run_analyze"
mps-motion = "mps.__main__:run_motion"

[tool.setuptools]
zip-safe = false
license-files = [
    "LICENSE",
    "licenses/LICENSE_nd2file",
    "licenses/LICENSE_czifile",
    "licenses/LICENSE_tifffile",
]
include-package-data = false

[tool.setuptools.packages.find]
where = ["src"]


[tool.pytest.ini_options]
addopts = [
   "--cov=mps",
   "--cov-report=html",
   "--cov-report=term-missing",
   "-v"
]

testpaths = [
    "tests"
]

[tool.ruff]
# Enable pycodestyle (`E`) and Pyflakes (`F`) codes by default.
select = ["E", "F"]
ignore = ["E402", "E741", "E731"]

# Allow autofix for all enabled rules (when `--fix`) is provided.
fixable = ["A", "B", "C", "D", "E", "F"]
unfixable = []

# Exclude a variety of commonly ignored directories.
exclude = [
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".hg",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".pytype",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "venv",
]

# Same as Black.
line-length = 100

# Allow unused variables when underscore-prefixed.
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"

# Assume Python 3.10.
target-version = "py310"

[tool.ruff.mccabe]
# Unlike Flake8, default to a complexity level of 10.
max-complexity = 10


[tool.coverage.run]
omit = [
    "mps/nd2file.py",
    "mps/czifile.py",
    "mps/tifffile.py",
]


[tool.bumpversion]
allow_dirty = false
commit = true
message = "Bump version: {current_version} → {new_version}"
tag = true
sign_tags = false
tag_name = "v{new_version}"
tag_message = "Bump version: {current_version} → {new_version}"
current_version = "2024.0.0"
parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)"
serialize = [
    "{major}.{minor}.{patch}"
]
search = 'version = "{current_version}"'
replace = 'version = "{new_version}"'


[[tool.bumpversion.files]]
filename = "pyproject.toml"