Merge pull request #37 from ComputationalPhysiology/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

Author: finsberg

.pre-commit-config.yaml

@@ -12,7 +12,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.8.4
+    rev: v0.9.1
     hooks:
       # Run the linter.
       - id: ruff
@@ -21,6 +21,6 @@ repos:
       - id: ruff-format
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.14.0
+    rev: v1.14.1
     hooks:
       - id: mypy

src/mps/analysis.py

@@ -84,7 +84,7 @@
 
 ExcludedData = namedtuple(
     "ExcludedData",
-    ("new_data, included_indices, " "all_included_indices"),
+    ("new_data, included_indices, all_included_indices"),
 )
 
 

src/mps/load.py

@@ -570,7 +570,7 @@ def __setstate__(self, state):
         self.__dict__.update(state)
 
     def __repr__(self):
-        return ("{self.__class__.__name__}" "({self._fname})").format(self=self)
+        return ("{self.__class__.__name__}({self._fname})").format(self=self)
 
     @property
     def name(self):

src/mps/plotter.py

@@ -45,7 +45,7 @@
 
     has_mpl = True
 except ImportError:
-    logger.debug(("Unable to import matplotlib. " "Plotting will not be possible"))
+    logger.debug(("Unable to import matplotlib. Plotting will not be possible"))
     has_mpl = False
     plt = None
 

src/mps/scripts/summary.py

@@ -194,7 +194,7 @@ def plot(
         "cAPD80 [ms]",
         "cAPD80 stdev",
         "cAPD80 #removed",
-        "ratio APD30/APD80" "APD90 [ms]",
+        "ratio APD30/APD80APD90 [ms]",
         "triangulation [ms]",
         "triangulation stdev",
         "APD90 [ms]",

src/mps/tifffile.py

@@ -1040,7 +1040,7 @@ def save(
                 photometric = RGB
                 if datadtypechar not in "B":
                     raise ValueError(
-                        "ImageJ does not support data type %s " "for RGB" % datadtypechar,
+                        "ImageJ does not support data type %s for RGB" % datadtypechar,
                     )
             elif photometric is None:
                 photometric = MINISBLACK
@@ -4900,7 +4900,7 @@ def open(self):
                 pass
         else:
             raise ValueError(
-                "The first parameter must be a file name, " "seekable binary stream, or FileHandle",
+                "The first parameter must be a file name, seekable binary stream, or FileHandle",
             )
 
         if self._offset:
@@ -6301,14 +6301,14 @@ def FRAME_ATTRS():
     def FILE_FLAGS():
         # TiffFile and TiffPage 'is_\*' attributes
         exclude = set(
-            "reduced final memmappable contiguous tiled " "chroma_subsampled".split(),
+            "reduced final memmappable contiguous tiled chroma_subsampled".split(),
         )
         return set(a[3:] for a in dir(TiffPage) if a[:3] == "is_" and a[3:] not in exclude)
 
     def FILE_EXTENSIONS():
         # TIFF file extensions
         return tuple(
-            "tif tiff ome.tif lsm stk qptiff pcoraw " "gel seq svs bif tf8 tf2 btf".split(),
+            "tif tiff ome.tif lsm stk qptiff pcoraw gel seq svs bif tf8 tf2 btf".split(),
         )
 
     def FILEOPEN_FILTER():

src/mps/utils.py

@@ -48,7 +48,7 @@
 
 grid_settings = namedtuple(
     "grid_settings",
-    ("nx, ny, dx, dy, x_start," " y_start, x_end, y_end"),
+    ("nx, ny, dx, dy, x_start, y_start, x_end, y_end"),
 )
 
 logger = logging.getLogger(__name__)