Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Issue with R packages when running Demo #60

Open
heleph4nt opened this issue Dec 2, 2024 · 0 comments
Open

Issue with R packages when running Demo #60

heleph4nt opened this issue Dec 2, 2024 · 0 comments

Comments

@heleph4nt
Copy link

Hi! I'm trying to use tappAS, but kept encountering the following, even with the Demo project and data from the tutorial:

When I open tappAS, it claims that I haven't installed all the R scripts, although I have double and triple-checked this.
The installation script also terminates with an error, so I installed them manually. I had a few issues with installing mdgsa, since it has been removed from the latest BioConductor version, but I included the versions of each of my packages below.

R_package_versions.txt

When I try to create a project using the Mus musculus Demo 1, the annotation is processed, but it seems as though something fails when analyzing the expression matrix. I've included the log below (sorry, the error messages are in German but easily translated)
log.txt

I'm not sure exactly what is going wrong, but it could also definitely be an issue on my part. I'm using R version 4.4.2, on an M1-chip macbook, if that helps. I've installed java as described in the installation pdf using wget.

Thank you very much for your help!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant