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methods description #2

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will-NYGC opened this issue Jan 2, 2024 · 1 comment

will-NYGC commented Jan 2, 2024

what is the difference between CimpleG, CimpleG-parab, CimpleG-unscaled, and oner?

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tiagomaie commented May 31, 2024

The difference between the these different methods is the following:

CimpleG: is the default and recommended method, described in our paper here.
CimpleG-parab: is a method based on our previous work here that uses DNAm under a specific space (difference in means, sum of variances) with an iterative parabola, to select the candidate probes.
CimpleG-unscaled and oner: are legacy code and deprecated, it will be removed soon

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