Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

--sra-acc argument behavior #444

Open
el239 opened this issue Nov 13, 2024 · 0 comments
Open

--sra-acc argument behavior #444

el239 opened this issue Nov 13, 2024 · 0 comments

Comments

@el239
Copy link

el239 commented Nov 13, 2024

An experiment ID (usually an SRX number on NCBI) can contain multiple runs, but the alignment only runs the first among them when this type of ID is supplied.
Granted, the documentation mentions to submit a comma separated list of SRA accession numbers (with the example showing SRR IDs). But an experiment ID is an SRA accession number as well, so I thought to humbly request that the software be modified to either align all runs (SRRs) under this type of ID, or yield a warning to stdout that only the first will be processed.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant