You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Upon looking through the flags listed in your README, along with the output of the umicollapse bam run, I can see there's output similar to the --log flag for UMI-Tools, but can't seem to find anything similar to --output-stats, which provides stat TSVs for edit_distance, per_umi, and per_umi_per_position.
Any information or clarification would be greatly appreciated! Thank you!
Kind regards,
Justin
The text was updated successfully, but these errors were encountered:
Hello Daniel,
I'm benchmarking UMICollapse as an alternative to UMI-Tools, and I was wondering if your tools provided similar stats/data as the following flag that UMI-Tools offers:
https://umi-tools.readthedocs.io/en/latest/reference/dedup.html#output-stats-prefix
Upon looking through the flags listed in your README, along with the output of the umicollapse bam run, I can see there's output similar to the --log flag for UMI-Tools, but can't seem to find anything similar to --output-stats, which provides stat TSVs for edit_distance, per_umi, and per_umi_per_position.
Any information or clarification would be greatly appreciated! Thank you!
Kind regards,
Justin
The text was updated successfully, but these errors were encountered: