The Gut Microbiome based Health Index Challenge features hundreds of WMS based taxonomic and functional profiles of healthy and unhealthy individuals.
The following repository is a part of the analysis. The following is developed here:
- Taxonomic abundance
- Alpha and beta diversity
- Differential analysis of taxa and functions
- Venn analysis
These analyses were performed on the following metagenomic data:
- Intestine (data provided)
- Intestine (Kraken)
- Intestine (Braken)
- Covid
David Alberto García Estrada - DavidAlberto
Project Link: CAMDA2024
- Gut
- Covid
- Kraken
- Braken
- Abundance
- Diversity
- Alpha
- Beta
- Differential Taxa
- Differential Function
- Venn Diagram