You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
After following the directions in the readme, I launch juno_ui which opens correctly. When I open a sample (such as astronaut), I see only a white line on the left side of the display area. As soon as I move my mouse over the area, juno_ui crashes with:
WARNING:root:openblas_set_num_threads not found
WARNING: QMainWindowLayout::count: ?
WARNING:vispy:QMainWindowLayout::count: ?
WARNING: Back buffer dpr of 2 doesn't match <NSViewBackingLayer: 0x600000ec7000> contents scale of 1 - updating layer to match.
WARNING:vispy:Back buffer dpr of 2 doesn't match <NSViewBackingLayer: 0x600000ec7000> contents scale of 1 - updating layer to match.
2024-09-24 13:30:51.308 Python[13979:15403776] WARNING: Secure coding is not enabled for restorable state! Enable secure coding by implementing NSApplicationDelegate.applicationSupportsSecureRestorableState: and returning YES.
WARNING: Traceback (most recent call last):
File "/opt/homebrew/lib/python3.10/site-packages/superqt/utils/_throttler.py", line 286, in _set_future_result
result = self._func(*self._args[: self._max_args], **self._kwargs)
File "/opt/homebrew/lib/python3.10/site-packages/superqt/utils/_throttler.py", line 226, in weak_func
return method(*args, **kwargs)
File "/opt/homebrew/lib/python3.10/site-packages/napari/_vispy/canvas.py", line 456, in _on_mouse_move
self._process_mouse_event(mouse_move_callbacks, event)
File "/opt/homebrew/lib/python3.10/site-packages/napari/_vispy/canvas.py", line 390, in _process_mouse_event
event.view_direction = self._calculate_view_direction(event.pos)
File "/opt/homebrew/lib/python3.10/site-packages/napari/_vispy/canvas.py", line 671, in _calculate_view_direction
view_direction_nd[list(self.viewer.dims.displayed)] = d
ValueError: shape mismatch: value array of shape (3,) could not be broadcast to indexing result of shape (2,)
WARNING:vispy:Traceback (most recent call last):
File "/opt/homebrew/lib/python3.10/site-packages/superqt/utils/_throttler.py", line 286, in _set_future_result
result = self._func(*self._args[: self._max_args], **self._kwargs)
File "/opt/homebrew/lib/python3.10/site-packages/superqt/utils/_throttler.py", line 226, in weak_func
return method(*args, **kwargs)
File "/opt/homebrew/lib/python3.10/site-packages/napari/_vispy/canvas.py", line 456, in _on_mouse_move
self._process_mouse_event(mouse_move_callbacks, event)
File "/opt/homebrew/lib/python3.10/site-packages/napari/_vispy/canvas.py", line 390, in _process_mouse_event
event.view_direction = self._calculate_view_direction(event.pos)
File "/opt/homebrew/lib/python3.10/site-packages/napari/_vispy/canvas.py", line 671, in _calculate_view_direction
view_direction_nd[list(self.viewer.dims.displayed)] = d
ValueError: shape mismatch: value array of shape (3,) could not be broadcast to indexing result of shape (2,)
fish: Job 1, 'juno_ui' terminated by signal SIGABRT (Abort)
/opt/homebrew/Cellar/[email protected]/3.10.13_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/multiprocessing/resource_tracker.py:224: UserWarning: resource_tracker: There appear to be 1 leaked semaphore objects to clean up at shutdown
warnings.warn('resource_tracker: There appear to be %d '
My platform is MacOS in case it is relevant.
Possible solution:
Since the environments.yml file doesn't include pinned versions, I figured this was a dependency incompatibility. I wrote a small script to take the most recent versions of the unpinned deps at the time of 2023-09-01 which appears like a time when this repo may have been more active. This generated a modified environment.yml:
which no longer crashes for me. I'm not sure if it is functionally correct, since I don't know how to use the software, but I thought I'd post in case this is useful for anyone.
The text was updated successfully, but these errors were encountered:
After following the directions in the readme, I launch juno_ui which opens correctly. When I open a sample (such as astronaut), I see only a white line on the left side of the display area. As soon as I move my mouse over the area, juno_ui crashes with:
My platform is MacOS in case it is relevant.
Possible solution:
Since the environments.yml file doesn't include pinned versions, I figured this was a dependency incompatibility. I wrote a small script to take the most recent versions of the unpinned deps at the time of 2023-09-01 which appears like a time when this repo may have been more active. This generated a modified environment.yml:
which no longer crashes for me. I'm not sure if it is functionally correct, since I don't know how to use the software, but I thought I'd post in case this is useful for anyone.
The text was updated successfully, but these errors were encountered: