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[EXP] Analysis, Denoising and Segmentation Pipeline #11

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16 of 22 tasks
patrickcleeve2 opened this issue May 23, 2023 · 0 comments
Open
16 of 22 tasks

[EXP] Analysis, Denoising and Segmentation Pipeline #11

patrickcleeve2 opened this issue May 23, 2023 · 0 comments
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@patrickcleeve2
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enhancement New feature or request

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@patrickcleeve2
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Core

  • Core salami acquistion / milling loop
  • Configuration tools

Analysis

  • Read sweep configuration
  • Generate parameter sweep
  • Run collection
  • Run analysis
  • FRSC implementation
  • Visualisation

Denoising

  • Training
  • Pre-process (Tile, Align)
  • Inference
  • Post-process (Restack / Align)

Segmentation

  • Labelling + Training
  • Inference
  • Visualisation
  • Diagnostics

Pipeline

  • Configuration
  • cmd line program
  • Segmentation
  • Denoising

Visualisation

  • Napari Visusalisation (All layers)
  • Onboard Diagnostics and Statistics

Performance

  • Denoise Inference: ~45s
  • Segmentation Inference: ~2s
@patrickcleeve2 patrickcleeve2 added the enhancement New feature or request label May 23, 2023
@patrickcleeve2 patrickcleeve2 self-assigned this May 23, 2023
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