From 9a20f9166de7e1c617ad89dba20b52a6a2ca482c Mon Sep 17 00:00:00 2001
From: Xiaotong Xu <102460988+ntxxt@users.noreply.github.com>
Date: Tue, 19 Mar 2024 10:38:38 +0100
Subject: [PATCH] add notes

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index f290986..951efcf 100644
--- a/README.md
+++ b/README.md
@@ -186,4 +186,4 @@ The command above will generate a folder in the current working directory, conta
     model.test(hdf5 = "tmpdir/GNN_esm_prediction.hdf5")
     ```
 ### Note about input pdb files 
-To make sure the mapping between interface residue and ems-2 embeddings are correct, make sure that for all the chains, residue numbering in the PDB file is continuous and start with residue '1'.
+To make sure the mapping between interface residue and ems-2 embeddings are correct, make sure that for all the chains, residue numbering in the PDB file is continuous and starts with residue '1'. We provide a script (scripts/pdb_renumber.py) to do the numbering.