changes package name

README.md

@@ -11,19 +11,19 @@
 
 ### Dependencies
 
-Before installing DeepRank-GNN you need to install:
+Before installing deeprank-core you need to install:
 
  * [pytorch](https://pytorch.org/): `conda install pytorch -c pytorch`. Note that by default the CPU version of pytorch will be installed, but you can also customize that installation following the instructions on pytorch website.
  * [pytorch_geometric](https://pytorch-geometric.readthedocs.io/en/latest/notes/installation.html): `conda install pyg -c pyg` (recommended).
  * [msms](https://ssbio.readthedocs.io/en/latest/instructions/msms.html): `conda install -c bioconda msms`. *For MacOS with M1 chip users*: you can follow [these instructions](https://ssbio.readthedocs.io/en/latest/instructions/msms.html). 
  * [reduce](https://github.com/rlabduke/reduce) Follow the instructions in the README
 
-### DeepRank-GNN installation
+### deeprank-core installation
 
-[//]: # (Once the dependencies installed, you can install the latest release of DeepRank-GNN using the PyPi package manager:)
+[//]: # (Once the dependencies installed, you can install the latest release of deeprank-core using the PyPi package manager:)
 
 [//]: # (```)
-[//]: # (pip install DeepRank-GNN)
+[//]: # (pip install deeprankcore)
 [//]: # (```)
 
 You can get all the new developments by cloning the repo and installing the code with

deeprankcore/tools/pssm.py

@@ -1,8 +1,8 @@
 from typing import TextIO
 
-from deeprank_gnn.models.structure import Residue, Chain
-from deeprank_gnn.models.pssm import PssmRow, PssmTable
-from deeprank_gnn.domain.amino_acid import amino_acids
+from deeprankcore.models.structure import Residue, Chain
+from deeprankcore.models.pssm import PssmRow, PssmTable
+from deeprankcore.domain.amino_acid import amino_acids
 
 amino_acids_by_letter = {
     amino_acid.one_letter_code: amino_acid for amino_acid in amino_acids

docs/conf.py

@@ -92,7 +92,7 @@
 master_doc = 'index'
 
 # General information about the project.
-project = 'deeprank-gnn'
+project = 'deeprankcore'
 copyright = '2021, Manon Reau, Nicolas Renaud'
 author = 'Manon Reau, Nicolas Renaud'
 
@@ -207,7 +207,7 @@
 # One entry per manual page. List of tuples
 # (source start file, name, description, authors, manual section).
 man_pages = [
-    (master_doc, 'deeprank-gnn', 'DeepRank-GNN Documentation',
+    (master_doc, 'deeprankcore', 'deeprank-core Documentation',
      [author], 1)
 ]
 

setup.py

@@ -6,7 +6,7 @@
 
 here = os.path.abspath(os.path.dirname(__file__))
 
-# To update the package version number, edit DeepRank-GNN/__version__.py
+# To update the package version number, edit deeprank-core/__version__.py
 version = {}
 with open(os.path.join(here, 'deeprankcore', '__version__.py')) as f:
     exec(f.read(), version)
@@ -24,7 +24,7 @@
     author_email='[email protected], [email protected]',
     url='https://github.com/DeepRank/deeprank-gnn-2',
     packages=find_packages(include=['deeprankcore']),
-    package_dir={'deeprankcore': 'deeprankcore'},
+    package_dir={'deeprank-gnn-2': 'deeprankcore'},
     include_package_data=True,
     license="Apache Software License 2.0",
     zip_safe=False,