Merge pull request #118 from DeepRank/remove_h5xplorer_setup

remove h5xplorer from setup.cfg

.github/actions/install-python-and-package/action.yml

@@ -59,6 +59,8 @@ runs:
         conda install -c bioconda msms
         # We install pytorch with conda because otherwise it breaks
         conda install pytorch -c pytorch
+        # In the future, release h5xplorer on PyPI
+        pip install git+https://github.com/DeepRank/h5xplorer.git@master
 
     - name: Install the package
       shell: bash {0}

README.md

@@ -16,6 +16,7 @@ Before installing deeprank-core you need to install:
  * [reduce](https://github.com/rlabduke/reduce): follow the instructions in the README of the reduce repository.
  * [msms](https://ssbio.readthedocs.io/en/latest/instructions/msms.html): `conda install -c bioconda msms`. *For MacOS with M1 chip users*: you can follow [these instructions](https://ssbio.readthedocs.io/en/latest/instructions/msms.html).
  * [pytorch](https://pytorch.org/): `conda install pytorch -c pytorch`. Note that by default the CPU version of pytorch will be installed, but you can also customize that installation following the instructions on pytorch website.
+ * [h5xplorer](https://github.com/DeepRank/h5xplorer): `pip install git+https://github.com/DeepRank/h5xplorer.git@master`.
 
 ### deeprank-core installation
 

setup.cfg

@@ -54,7 +54,6 @@ install_requires =
     torch-cluster >= 1.6.0
     torch-spline-conv >= 1.2.1
     torch-geometric >= 2.0.4
-    h5xplorer @ git+https://github.com/DeepRank/h5xplorer@master#egg=h5xplorer
 
 [options.extras_require]
 dev =