From ff3adbd858fa4acdac616e96f4ea706b366aef95 Mon Sep 17 00:00:00 2001
From: Delphine Lariviere <lariviere.delphine@gmail.com>
Date: Fri, 13 Sep 2024 13:15:22 -0400
Subject: [PATCH] correct typo

---
 .../Scaffolding-HiC-VGP8.ga                   | 64 +++++++++++++++----
 1 file changed, 50 insertions(+), 14 deletions(-)

diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga
index 912d4677a..499b03b32 100644
--- a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga
+++ b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga
@@ -73,7 +73,13 @@
             "type": "parameter_input",
             "uuid": "3495a63c-bcd5-45fa-b327-ed7ec0234e78",
             "when": null,
-            "workflow_outputs": []
+            "workflow_outputs": [
+                {
+                    "label": null,
+                    "output_name": "output",
+                    "uuid": "1c4419fd-2eca-4464-9a67-4d693379981b"
+                }
+            ]
         },
         "2": {
             "annotation": "",
@@ -100,7 +106,13 @@
             "type": "data_input",
             "uuid": "13cd4c1c-968b-4077-9845-e06738a2efb8",
             "when": null,
-            "workflow_outputs": []
+            "workflow_outputs": [
+                {
+                    "label": null,
+                    "output_name": "output",
+                    "uuid": "8886e85a-6c79-49f0-8291-357583692bec"
+                }
+            ]
         },
         "3": {
             "annotation": "",
@@ -127,7 +139,13 @@
             "type": "parameter_input",
             "uuid": "1f4997fc-1880-4416-8857-2a63d3501a6c",
             "when": null,
-            "workflow_outputs": []
+            "workflow_outputs": [
+                {
+                    "label": null,
+                    "output_name": "output",
+                    "uuid": "bcb451a9-4588-4f66-97e9-e49a090b1355"
+                }
+            ]
         },
         "4": {
             "annotation": "Taxonomic lineage for the organism being assembled for Busco analysis\n",
@@ -154,7 +172,13 @@
             "type": "parameter_input",
             "uuid": "b45e6bda-be0e-45e7-a9b1-17325a08dd76",
             "when": null,
-            "workflow_outputs": []
+            "workflow_outputs": [
+                {
+                    "label": null,
+                    "output_name": "output",
+                    "uuid": "9a90c250-d96c-40eb-8899-8458190ba51f"
+                }
+            ]
         },
         "5": {
             "annotation": "Forward reads as a single dataset in fastq format",
@@ -235,7 +259,13 @@
             "type": "parameter_input",
             "uuid": "b899a210-60c2-4e9e-8a34-e1bc82ef373d",
             "when": null,
-            "workflow_outputs": []
+            "workflow_outputs": [
+                {
+                    "label": null,
+                    "output_name": "output",
+                    "uuid": "d1463002-620e-4349-917e-8b04f8683ccc"
+                }
+            ]
         },
         "8": {
             "annotation": "Estimated genome size from contiging workflow",
@@ -289,7 +319,13 @@
             "type": "data_input",
             "uuid": "bc993517-ae23-417d-8eb1-891a127f544c",
             "when": null,
-            "workflow_outputs": []
+            "workflow_outputs": [
+                {
+                    "label": null,
+                    "output_name": "output",
+                    "uuid": "0229d700-2a03-4279-a262-41f91d5592ef"
+                }
+            ]
         },
         "10": {
             "annotation": "",
@@ -795,7 +831,7 @@
                 "owner": "bgruening",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"find_and_replace\": [{\"__index__\": 0, \"find_pattern\": \"scaffold_[1-9]*\", \"replace_pattern\": {\"__class__\": \"ConnectedValue\"}, \"is_regex\": true, \"global\": true, \"caseinsensitive\": false, \"wholewords\": true, \"skip_first_line\": false, \"searchwhere\": {\"searchwhere_select\": \"line\", \"__current_case__\": 0}}], \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"find_and_replace\": [{\"__index__\": 0, \"find_pattern\": \"scaffold_[0-9]*\", \"replace_pattern\": {\"__class__\": \"ConnectedValue\"}, \"is_regex\": true, \"global\": true, \"caseinsensitive\": false, \"wholewords\": true, \"skip_first_line\": false, \"searchwhere\": {\"searchwhere_select\": \"line\", \"__current_case__\": 0}}], \"infile\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "9.3+galaxy1",
             "type": "tool",
             "uuid": "4d5d4a06-e906-4c73-8159-050d49158dd3",
@@ -1265,15 +1301,15 @@
             "uuid": "c30b907f-05c9-4709-a939-b66f52daf6e4",
             "when": null,
             "workflow_outputs": [
-                {
-                    "label": "Busco Summary image",
-                    "output_name": "summary_image",
-                    "uuid": "cf7a5b93-9021-4029-8107-015787fa2ca5"
-                },
                 {
                     "label": "Busco Summary",
                     "output_name": "busco_sum",
                     "uuid": "49589149-e16f-4a88-9d84-c1b06288021f"
+                },
+                {
+                    "label": "Busco Summary image",
+                    "output_name": "summary_image",
+                    "uuid": "cf7a5b93-9021-4029-8107-015787fa2ca5"
                 }
             ]
         },
@@ -2184,6 +2220,6 @@
     "tags": [
         "VGP_curated"
     ],
-    "uuid": "9bbbb7d1-fa86-450f-9b22-f1495d2bccdf",
-    "version": 6
+    "uuid": "dbe64df1-13fc-49fa-8a14-ead72f9d7ea1",
+    "version": 7
 }
\ No newline at end of file