From 897911a0f20c42336d7ab82e8e8b1f8b80c9440f Mon Sep 17 00:00:00 2001 From: Fabiola Curion Date: Fri, 19 Apr 2024 15:17:51 +0200 Subject: [PATCH] Update pipeline.yml integration01 --- tests/integration_1/pipeline.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/tests/integration_1/pipeline.yml b/tests/integration_1/pipeline.yml index 9e42dd81..29c930bf 100644 --- a/tests/integration_1/pipeline.yml +++ b/tests/integration_1/pipeline.yml @@ -70,6 +70,7 @@ rna: # SCVI args #----------------------------- scvi: + seed: 1492 exclude_mt_genes: True mt_column: mt model_args: @@ -217,7 +218,7 @@ multimodal: # this is a minimal set of parameters that will be expected # you can add any other param from the tutorials and they will # be parsed alongside the others - + seed: 1492 # totalvi will run on rna and prot modalities: rna,prot exclude_mt_genes: True @@ -237,6 +238,7 @@ multimodal: # you can add any other param from the tutorials and they will # be parsed alongside the others # leave arguments blank for default + seed: 1492 lowmem: True # Set lowmem to True will subset the atac to the top 25k HVF. # This is to deal with concatenation of atac,rna on large datasets which at the moment is suboptimally required by scvitools.