From 1ce27e0b84dab1aca6263793897016f85aa4d28c Mon Sep 17 00:00:00 2001
From: giuliaelgarcia <147185635+giuliaelgarcia@users.noreply.github.com>
Date: Tue, 12 Mar 2024 16:48:12 +0000
Subject: [PATCH] qc_gene_list_mouse upload

Adding the qc mouse gene list for ingestion with mouse data.
---
 panpipes/resources/qc_gene_list_mouse.csv | 256 ++++++++++++++++++++++
 1 file changed, 256 insertions(+)
 create mode 100644 panpipes/resources/qc_gene_list_mouse.csv

diff --git a/panpipes/resources/qc_gene_list_mouse.csv b/panpipes/resources/qc_gene_list_mouse.csv
new file mode 100644
index 00000000..3505daf6
--- /dev/null
+++ b/panpipes/resources/qc_gene_list_mouse.csv
@@ -0,0 +1,256 @@
+mod,feature,group
+rna,Hba-a1,hb
+rna,Hba-a2,hb
+rna,Hbb-bs,hb
+rna,Hbb-b2,hb
+rna,Hbb-bt,hb
+rna,Hbb-bh2,hb
+rna,Hbb-b1,hb
+rna,Hbb-y,hb
+rna,Hbb-bh1,hb
+rna,Hbb-bh0,hb
+rna,Hbq1a,hb
+rna,Hbq1b,hb
+rna,Hba-x,hb
+rna,Igll1,exclude
+rna,Igll1,ig
+rna,Iglon5,ig
+rna,Iglon5,exclude
+rna,Rp1,rp
+rna,Rp1l1,rp
+rna,Rp2,rp
+rna,Rp9,rp
+rna,Rpa1,rp
+rna,Rpa2,rp
+rna,Rpa3,rp
+rna,Rpain,rp
+rna,Rpap1,rp
+rna,Rpap2,rp
+rna,Rpap3,rp
+rna,Rpe,rp
+rna,Rpe65,rp
+rna,Rpf1,rp
+rna,Rpf2,rp
+rna,Rpgr,rp
+rna,Rpgrip1,rp
+rna,Rpgrip1l,rp
+rna,Rph3a,rp
+rna,Rph3al,rp
+rna,Rpia,rp
+rna,Rpl10,rp
+rna,Rpl10-ps3,rp
+rna,Rpl10a,rp
+rna,Rpl10l,rp
+rna,Rpl11,rp
+rna,Rpl12,rp
+rna,Rpl13,rp
+rna,Rpl13-ps6,rp
+rna,Rpl13a,rp
+rna,Rpl14,rp
+rna,Rpl15,rp
+rna,Rpl17-ps8,rp
+rna,Rpl17,rp
+rna,Rpl18,rp
+rna,Rpl18a,rp
+rna,Rpl19,rp
+rna,Rpl21,rp
+rna,Rpl22,rp
+rna,Rpl22l1,rp
+rna,Rpl23,rp
+rna,Rpl23a,rp
+rna,Rpl24,rp
+rna,Rpl26,rp
+rna,Rpl27,rp
+rna,Rpl27a,rp
+rna,Rpl28,rp
+rna,Rpl27rt,rp
+rna,Rpl29,rp
+rna,Rpl3,rp
+rna,Rpl30,rp
+rna,Rpl31,rp
+rna,Rpl32l,rp
+rna,Rpl32,rp
+rna,Rpl34-ps1,rp
+rna,Rpl34,rp
+rna,Rpl34-ps2,rp
+rna,Rpl35rt,rp
+rna,Rpl35,rp
+rna,Rpl35a,rp
+rna,Rpl36-ps12,rp
+rna,Rpl36,rp
+rna,Rpl36a,rp
+rna,Rpl36al,rp
+rna,Rpl37,rp
+rna,Rpl37rt,rp
+rna,Rpl37a,rp
+rna,Rpl38,rp
+rna,Rpl39,rp
+rna,Rpl39l,rp
+rna,Rpl3l,rp
+rna,Rpl4,rp
+rna,Rpl5,rp
+rna,Rpl6,rp
+rna,Rpl6l,rp
+rna,Rpl7,rp
+rna,Rpl7a,rp
+rna,Rpl7l1,rp
+rna,Rpl8,rp
+rna,Rpl9-ps1,rp
+rna,Rpl9,rp
+rna,Rpl9-ps6,rp
+rna,Rplp0,rp
+rna,Rplp1,rp
+rna,Rplp1rt,rp
+rna,Rplp2,rp
+rna,Rplp2-ps1,rp
+rna,Rpn1,rp
+rna,Rpn2,rp
+rna,Rpp14,rp
+rna,Rpp21,rp
+rna,Rpp25,rp
+rna,Rpp25l,rp
+rna,Rpp30,rp
+rna,Rpp38,rp
+rna,Rpp40,rp
+rna,Rprd1a,rp
+rna,Rprd1b,rp
+rna,Rprd2,rp
+rna,Rprm,rp
+rna,Rprml,rp
+rna,Rps10,rp
+rna,Rps11,rp
+rna,Rps12,rp
+rna,Rps13,rp
+rna,Rps14,rp
+rna,Rps15,rp
+rna,Rps15a,rp
+rna,Rps16,rp
+rna,Rps17,rp
+rna,Rps18,rp
+rna,Rps19,rp
+rna,Rps19bp1,rp
+rna,Rps2,rp
+rna,Rps20,rp
+rna,Rps21,rp
+rna,Rps23,rp
+rna,Rps24,rp
+rna,Rps25,rp
+rna,Rps26,rp
+rna,Rps27rt,rp
+rna,Rps27,rp
+rna,Rps27a,rp
+rna,Rps27l,rp
+rna,Rps28,rp
+rna,Rps29,rp
+rna,Rps3,rp
+rna,Rps3a1,rp
+rna,Rps4x,rp
+rna,Rps5,rp
+rna,Rps6-ps4,rp
+rna,Rps6,rp
+rna,Rps6ka1,rp
+rna,Rps6ka2,rp
+rna,Rps6ka3,rp
+rna,Rps6ka4,rp
+rna,Rps6ka5,rp
+rna,Rps6ka6,rp
+rna,Rps6kb1,rp
+rna,Rps6kb2,rp
+rna,Rps6kc1,rp
+rna,Rps6kl1,rp
+rna,Rps7,rp
+rna,Rps8,rp
+rna,Rps9,rp
+rna,Rpsa,rp
+rna,Rptn,rp
+rna,Rptor,rp
+rna,Rpusd1,rp
+rna,Rpusd2,rp
+rna,Rpusd3,rp
+rna,Rpusd4,rp
+rna,Traj33,exclude
+rna,Traj38,exclude
+rna,Traj53,exclude
+rna,Trav11,exclude
+rna,Trav11d,exclude
+rna,Trav8d-1,exclude
+rna,Trav8d-2,exclude
+rna,Trav8n-2,exclude
+rna,Trav8-1,exclude
+rna,Trav12n-2,exclude
+rna,Trav12-2,exclude
+rna,Trav12-3,exclude
+rna,Trav12n-3,exclude
+rna,Trav12-1,exclude
+rna,Trav12d-1,exclude
+rna,Trav12d-3,exclude
+rna,Trav12n-1,exclude
+rna,Trav12d-2,exclude
+rna,Trav16n,exclude
+rna,Trav16,exclude
+rna,Trav16d-dv11,exclude
+rna,Trav13d-1,exclude
+rna,Trav13n-2,exclude
+rna,Trav13d-3,exclude
+rna,Trav13-1,exclude
+rna,Trav13-2,exclude
+rna,Trav13-4-dv7,exclude
+rna,Trav13d-4,exclude
+rna,Trav13d-2,exclude
+rna,Trav13n-1,exclude
+rna,Trav13n-3,exclude
+rna,Trav13-5,exclude
+rna,Trav13n-4,exclude
+rna,Trav14-2,exclude
+rna,Trav14-3,exclude
+rna,Trav14d-3-dv8,exclude
+rna,Trav14-1,exclude
+rna,Trav14n-3,exclude
+rna,Trav14n-2,exclude
+rna,Trav14n-1,exclude
+rna,Trav14d-2,exclude
+rna,Trav18,exclude
+rna,Trav19,exclude
+rna,Trdv1,exclude
+rna,Trav23,exclude
+rna,Trav2,exclude
+rna,Trav3-1,exclude
+rna,Trav3n-3,exclude
+rna,Trav3d-3,exclude
+rna,Trav3-4,exclude
+rna,Trav3-3,exclude
+rna,Trbv12-1,exclude
+rna,Trbv12-2,exclude
+rna,Trbv17,exclude
+rna,Trbv19,exclude
+rna,Trbv3,exclude
+rna,Trbv28,exclude
+rna,Trbv31,exclude
+rna,Trdj2,exclude
+rna,Trgv7,exclude
+rna,Trgv3,exclude
+rna,Trgv2,exclude
+rna,Trgv1,exclude
+rna,mt-Nd1,mt
+rna,mt-Nd2,mt
+rna,mt-Co1,mt
+rna,mt-Co2,mt
+rna,mt-Atp8,mt
+rna,mt-Atp6,mt
+rna,mt-Co3,mt
+rna,mt-Nd3,mt
+rna,mt-Nd4l,mt
+rna,mt-Nd4,mt
+rna,mt-Nd5,mt
+rna,mt-Nd6,mt
+rna,mt-Cytb,mt
+rna,Cd8b1,CD8cytotoxic
+rna,Cd8a,CD8cytotoxic
+rna,Adgrg5,CD8cytotoxic
+rna,Klrd1,CD8cytotoxic
+rna,Itgae,CD8cytotoxic
+rna,Fam241a,CD8cytotoxic
+rna,Ccr9,CD8cytotoxic
+rna,Trbv14,CD8cytotoxic
+rna,Nkg7,CD8cytotoxic
+rna,Cd226,CD8cytotoxic
\ No newline at end of file