From 44be885688b2b8ca3dc379e330664df928db977c Mon Sep 17 00:00:00 2001
From: giuliaelgarcia <147185635+giuliaelgarcia@users.noreply.github.com>
Date: Tue, 12 Mar 2024 13:40:28 +0000
Subject: [PATCH] Changing qc sore_genes default  pipeline.yml

Changed the RNA QC score_genes default from MarkersNutro to blank in the ingest pipeline.yml
---
 panpipes/panpipes/pipeline_ingest/pipeline.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/panpipes/panpipes/pipeline_ingest/pipeline.yml b/panpipes/panpipes/pipeline_ingest/pipeline.yml
index 0bf550f7..c5ee70b5 100644
--- a/panpipes/panpipes/pipeline_ingest/pipeline.yml
+++ b/panpipes/panpipes/pipeline_ingest/pipeline.yml
@@ -86,7 +86,7 @@ custom_genes_file: resources/qc_genelist_1.0.csv
 
 # (for pipeline_ingest.py)
 calc_proportions: hb,mt,rp
-score_genes: MarkersNeutro
+score_genes: 
 
 # cell cycle action
 ccgenes: default