From 4784a38b68de450f451816c11921432292b673c4 Mon Sep 17 00:00:00 2001 From: Lilly Date: Wed, 28 Feb 2024 19:33:53 +0100 Subject: [PATCH] Added link in index.rst --- docs/yaml_docs/index.rst | 1 + docs/yaml_docs/pipeline_preprocess_yml.md | 1 + panpipes/panpipes/pipeline_preprocess/pipeline.yml | 2 -- 3 files changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/yaml_docs/index.rst b/docs/yaml_docs/index.rst index ad028376..94ab5126 100644 --- a/docs/yaml_docs/index.rst +++ b/docs/yaml_docs/index.rst @@ -6,6 +6,7 @@ Workflows configuration files useful_info_on_yml pipeline_ingestion_yml + pipeline_preprocess_yml pipeline_integration_yml spatial_qc spatial_preprocess diff --git a/docs/yaml_docs/pipeline_preprocess_yml.md b/docs/yaml_docs/pipeline_preprocess_yml.md index ae50f441..ad0edc04 100644 --- a/docs/yaml_docs/pipeline_preprocess_yml.md +++ b/docs/yaml_docs/pipeline_preprocess_yml.md @@ -44,6 +44,7 @@ Specified by the following three parameters: condaenv `String` (Path)
Path to conda environment that should be used to run panpipes. Leave blank if running native or your cluster automatically inherits the login node environment. + For more information on this, please refer to the detailed explanation [here](https://panpipes-pipelines.readthedocs.io/en/latest/install.html#specifying-conda-environments-to-run-panpipes). ## General project specifications diff --git a/panpipes/panpipes/pipeline_preprocess/pipeline.yml b/panpipes/panpipes/pipeline_preprocess/pipeline.yml index 4d920fc4..ec0941e9 100644 --- a/panpipes/panpipes/pipeline_preprocess/pipeline.yml +++ b/panpipes/panpipes/pipeline_preprocess/pipeline.yml @@ -15,8 +15,6 @@ resources: condaenv: -# allows for tweaking where the jobs get submitted, in case there is a special queue for long jobs or you have access to a gpu -# leave as is if you do not want to use the alternative queues #------------------------------- # General project specifications