diff --git a/docs/img/clr_margins.png b/docs/img/clr_margins.png new file mode 100644 index 00000000..8288847f Binary files /dev/null and b/docs/img/clr_margins.png differ diff --git a/docs/usage/normalization_methods.md b/docs/usage/normalization_methods.md index 904196bd..8f1c0cb7 100644 --- a/docs/usage/normalization_methods.md +++ b/docs/usage/normalization_methods.md @@ -18,6 +18,8 @@ Additionally, the normalized data can be scaled using scanpy's [sc.pp.scale](htt *if you come from R, please note that the [margins are transposed](https://images.hindustantimes.com/rf/image_size_630x354/HT/p2/2017/09/21/Pictures/_78c6a162-9e94-11e7-9c3b-8e901839ece0.JPG) in the Python and anndata world* + + 2. dsb using [muon's prot processing](https://muon.readthedocs.io/en/latest/api/generated/muon.prot.pp.html). This method is only applicable when you have raw 10x inputs (see [supported input files](https://panpipes-pipelines.readthedocs.io/en/latest/usage/setup_for_qc_mm.html#supported-input-filetypes)). ## ATAC