From 6437200ce630a2dbceb37a861e8d6291325d7e26 Mon Sep 17 00:00:00 2001 From: SarahOuologuem Date: Tue, 5 Mar 2024 09:27:51 +0000 Subject: [PATCH] re-add check --- panpipes/panpipes/pipeline_clustering.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/panpipes/panpipes/pipeline_clustering.py b/panpipes/panpipes/pipeline_clustering.py index 690e7a28..99837875 100644 --- a/panpipes/panpipes/pipeline_clustering.py +++ b/panpipes/panpipes/pipeline_clustering.py @@ -338,8 +338,8 @@ def plot_marker_dotplots(marker_file, log_file, outfile, """ data_obj=PARAMS['sample_prefix'] + "_clustered.h5mu" # check there is a figures directory - #if not os.path.exists(fig_path): - # os.makedirs(fig_path) + if not os.path.exists(fig_path): + os.makedirs(fig_path) cmd = """ python %(py_path)s/plot_scanpy_markers.py \ --infile %(data_obj)s \