diff --git a/panpipes/panpipes/pipeline_ingest.py b/panpipes/panpipes/pipeline_ingest.py index 335cca78..59d53c15 100644 --- a/panpipes/panpipes/pipeline_ingest.py +++ b/panpipes/panpipes/pipeline_ingest.py @@ -156,16 +156,8 @@ def load_mudatas(rna_path, outfile, cmd += " > logs/load_mudatas_%(sample_id)s.log" # print(cmd) job_kwargs["job_threads"] = PARAMS['resources_threads_medium'] - log_msg = f"Output file '{outfile}' => Log file '{logfile}'" + log_msg = f"TASK: 'load_mudatas'" + f"IN CASE OF ERROR, PLEASE REFER TO : '{logfile}' FOR MORE INFORMATION." get_logger().info(log_msg) - # get_logger().info( - # "Log" - # "Task: 'load_mudatas'" + "\n" + - # f"sample_id: {sample_id}" + "\n" + - # f"Output file(s): {outfile}" + "\n" + - # f"Log file: {logfile}" + "\n" + - # "In case of error, please refer to the log file(s) above for more information." - # ) P.run(cmd, **job_kwargs)