From 6385ed7d4feac0ca95f694df6858ebdff1596b58 Mon Sep 17 00:00:00 2001
From: giuliaelgarcia <147185635+giuliaelgarcia@users.noreply.github.com>
Date: Tue, 12 Mar 2024 13:23:00 +0000
Subject: [PATCH] Corrected score_genes default in  pipeline_ingestion_yml.md

Corrected the QC socre_genes to default blank in the ingestion yml
---
 docs/yaml_docs/pipeline_ingestion_yml.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/docs/yaml_docs/pipeline_ingestion_yml.md b/docs/yaml_docs/pipeline_ingestion_yml.md
index edb7c0fc..5ab4f411 100644
--- a/docs/yaml_docs/pipeline_ingestion_yml.md
+++ b/docs/yaml_docs/pipeline_ingestion_yml.md
@@ -236,8 +236,8 @@ exclude: exclude these genes from the HVG selection, if they are deemed HV.
 <span class="parameter">calc_proportions</span> `String` (comma-separated), Default: hb,mt,rp<br>
     Specify what gene proportions you want to calculate for each cell (e.g. mt for mitochondrial).
     
-<span class="parameter">score_genes</span> `String`, Default: MarkersNeutro<br>
-    Specify what genes should be scored.
+<span class="parameter">score_genes</span> `String`, Default: (blank) <br>
+     Specify what genes should be scored.
 
 Furthermore, there is the possibility to define a cell cycle action:
 
@@ -432,4 +432,4 @@ This can help to determine any inconsistencies in staining per channel and other
     The maximum value will be set at the value of the 99.5% quantile, applied per feature.
     Note that this feature is in the default muon `mu.pp.dsb` code, but manually implemented here.
 
-  
\ No newline at end of file
+