From 7cdafa68b9be720e08749d6277aaa5c5626f298e Mon Sep 17 00:00:00 2001 From: bio-la Date: Fri, 26 Apr 2024 14:17:37 +0200 Subject: [PATCH] custom gene lists --- docs/usage/gene_list_format.md | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/docs/usage/gene_list_format.md b/docs/usage/gene_list_format.md index 7ac432bb..5fb0ecd1 100644 --- a/docs/usage/gene_list_format.md +++ b/docs/usage/gene_list_format.md @@ -78,18 +78,17 @@ If the group name is not spelled correctly, the action will fail. See [The secti The human custom genelist file can be supplied by the user in the workflows configuration files: 1. **Ingest workflow** - pipeline_ingest config file: (pipeline.yml) - By customizing the following parameters + + Supply the gene list by customizing the following parameter ```yaml custom_genes_file: resources/qc_genelist_1.0.csv ``` -1. **Preprocess workflow** - - pipeline_preprocess config file: (pipeline.yml) - By customizing the following parameter +2. **Preprocess workflow** pipeline_preprocess config file: (pipeline.yml) + + Supply the gene list by customizing the following parameter ```yaml exclude_file: resources/qc_genelist_1.0.csv ```