From 7e04d41dd39ce95c49bae24f85e3956dc0b9763c Mon Sep 17 00:00:00 2001 From: SarahOuologuem Date: Tue, 17 Dec 2024 13:11:44 +0100 Subject: [PATCH] xenium adjust figshare links --- .github/workflows/spatial_ingestion_xenium.yml | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/.github/workflows/spatial_ingestion_xenium.yml b/.github/workflows/spatial_ingestion_xenium.yml index 87382353..366beb3d 100644 --- a/.github/workflows/spatial_ingestion_xenium.yml +++ b/.github/workflows/spatial_ingestion_xenium.yml @@ -58,17 +58,17 @@ jobs: run: | mkdir spatial spatial/ingestion_xenium spatial/ingestion_xenium/data cd spatial/ingestion_xenium/data - curl -L -o experiment.xenium https://figshare.com/ndownloader/files/51243614 - curl -L -o nucleus_boundaries.parquet https://figshare.com/ndownloader/files/51243605 - curl -L -o cell_boundaries.parquet https://figshare.com/ndownloader/files/51243596 - curl -L -o transcripts.parquet https://figshare.com/ndownloader/files/51243608 - curl -L -o cell_feature_matrix.h5 https://figshare.com/ndownloader/files/51243599 - curl -L -o cells.parquet https://figshare.com/ndownloader/files/51243620 - curl -L -o morphology_mip.ome.tif https://figshare.com/ndownloader/files/51243623 - curl -L -o cells.zarr.zip https://figshare.com/ndownloader/files/51244049 + curl -L -o experiment.xenium https://figshare.com/ndownloader/files/51244265 + curl -L -o nucleus_boundaries.parquet https://figshare.com/ndownloader/files/51244286 + curl -L -o cell_boundaries.parquet https://figshare.com/ndownloader/files/51244244 + curl -L -o transcripts.parquet https://figshare.com/ndownloader/files/51244283 + curl -L -o cell_feature_matrix.h5 https://figshare.com/ndownloader/files/51244247 + curl -L -o cells.parquet https://figshare.com/ndownloader/files/51244259 + curl -L -o morphology_mip.ome.tif https://figshare.com/ndownloader/files/51244415 + curl -L -o cells.zarr.zip https://figshare.com/ndownloader/files/51244262 mkdir morphology_focus cd morphology_focus - curl -L -o morphology_focus_0000.ome.tif https://figshare.com/ndownloader/files/51243626 + curl -L -o morphology_focus_0000.ome.tif https://figshare.com/ndownloader/files/51244277 # Note: we run the following to test that the commands works