From 88695e6d72db3278b4ff26077f12a310216001e7 Mon Sep 17 00:00:00 2001 From: Kevin Rue-Albrecht Date: Thu, 7 Mar 2024 18:08:33 +0000 Subject: [PATCH] download additional data files --- .github/workflows/visualization-ci.yml | 17 +++++++---------- 1 file changed, 7 insertions(+), 10 deletions(-) diff --git a/.github/workflows/visualization-ci.yml b/.github/workflows/visualization-ci.yml index a10d65dc..c397e5ad 100644 --- a/.github/workflows/visualization-ci.yml +++ b/.github/workflows/visualization-ci.yml @@ -56,6 +56,13 @@ jobs: mkdir -p teaseq/vis/data && cd teaseq/vis/data curl -L -o teaseq_clustered.h5mu https://figshare.com/ndownloader/files/44795785 + - name: Preparing the data + run: | + mkdir -p teaseq/vis && cd teaseq/vis + curl -o paired_scatters.csv https://panpipes-tutorials.readthedocs.io/en/latest/_downloads/69bf8febdd6c95141c3e20de10f533c4/paired_scatters.csv + curl -o custom_markers.csv https://panpipes-tutorials.readthedocs.io/en/latest/_downloads/cd6f66ea922d4bd2b896050780f0d8dd/custom_markers.csv + curl -o paired_scatters_markers.csv https://panpipes-tutorials.readthedocs.io/en/latest/_downloads/68a767929ecdc47cf945f855f58e046a/paired_scatters_markers.csv + # Note: we run the following to test that the commands works # However, the following task will replacing the file anyway - name: Preparing the configuration file @@ -69,16 +76,6 @@ jobs: cd teaseq/vis/data curl -o pipeline.yml https://panpipes-tutorials.readthedocs.io/en/latest/_downloads/29daa86241829b362152785caf30ab61/pipeline.yml - - name: Replace template contents in configuration file - run: | - cd teaseq/vis/data - sed -i 's+paired_scatters: True+paired_scatters: False+g' pipeline.yml - - - name: Check line was edited - run: | - cd teaseq/vis/data - grep paired_scatters pipeline.yml - - name: File tree run: tree teaseq