From 8ab1570e057ee3a8fe8a72d80470d429d51460c6 Mon Sep 17 00:00:00 2001 From: SarahOuologuem Date: Tue, 26 Nov 2024 11:06:05 +0100 Subject: [PATCH] adjust sample submission file --- .github/workflows/spatial_ingestion_visium-ci.yml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/.github/workflows/spatial_ingestion_visium-ci.yml b/.github/workflows/spatial_ingestion_visium-ci.yml index 8fb57e05..a3bac8ca 100644 --- a/.github/workflows/spatial_ingestion_visium-ci.yml +++ b/.github/workflows/spatial_ingestion_visium-ci.yml @@ -78,12 +78,11 @@ jobs: - name: Preparing the submission file run: | cd spatial/ingestion - curl -o sample_file_qc_spatial.txt https://raw.githubusercontent.com/DendrouLab/panpipes-tutorials/main/docs/ingesting_visium_data/sample_file_qc_spatial.txt - + curl -o sample_file_qc_spatial.txt https://raw.githubusercontent.com/DendrouLab/panpipes-tutorials/sarah_spatialData/docs/ingesting_visium_data/sample_file_qc_visium.txt - name: Preparing the yaml file run: | cd spatial/ingestion - curl -o pipeline.yml https://raw.githubusercontent.com/DendrouLab/panpipes-tutorials/main/docs/ingesting_visium_data/pipeline.yml + curl -o pipeline.yml https://raw.githubusercontent.com/DendrouLab/panpipes-tutorials/sarah_spatialData/docs/ingesting_visium_data/pipeline.yml - name: File tree if: env.debug == 'true'