From b36d5827389919f437247bb26aac2c742d1ef066 Mon Sep 17 00:00:00 2001
From: Wojciech Lason <40389067+wlason@users.noreply.github.com>
Date: Fri, 1 Nov 2024 21:40:53 +0000
Subject: [PATCH] Update run_scanpyQC_rna.py

---
 panpipes/python_scripts/run_scanpyQC_rna.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/panpipes/python_scripts/run_scanpyQC_rna.py b/panpipes/python_scripts/run_scanpyQC_rna.py
index b1fca50d..04e8fe5b 100644
--- a/panpipes/python_scripts/run_scanpyQC_rna.py
+++ b/panpipes/python_scripts/run_scanpyQC_rna.py
@@ -57,7 +57,7 @@
                     default="mitochondrial,ribosomal",
                     help="which list of genes to use to calc proportion of mapped reads over total,per cell?")
 parser.add_argument("--score_genes",
-                    default="MarkersNeutro",
+                    default=None,
                     help="which list of genes to use to scanpy.tl.score_genes per cell?")
 
 args, opt = parser.parse_known_args()