diff --git a/docs/yaml_docs/pipeline_ingestion_yml.md b/docs/yaml_docs/pipeline_ingestion_yml.md index edb7c0fc..5ab4f411 100644 --- a/docs/yaml_docs/pipeline_ingestion_yml.md +++ b/docs/yaml_docs/pipeline_ingestion_yml.md @@ -236,8 +236,8 @@ exclude: exclude these genes from the HVG selection, if they are deemed HV. calc_proportions `String` (comma-separated), Default: hb,mt,rp
Specify what gene proportions you want to calculate for each cell (e.g. mt for mitochondrial). -score_genes `String`, Default: MarkersNeutro
- Specify what genes should be scored. +score_genes `String`, Default: (blank)
+ Specify what genes should be scored. Furthermore, there is the possibility to define a cell cycle action: @@ -432,4 +432,4 @@ This can help to determine any inconsistencies in staining per channel and other The maximum value will be set at the value of the 99.5% quantile, applied per feature. Note that this feature is in the default muon `mu.pp.dsb` code, but manually implemented here. - \ No newline at end of file +