docker-image.yml

name: Docker Image CI

on:
  push:
  pull_request:
  release:
    type: [published]

env:
  TEST_TAG: dessimozlab/fastoma:test

jobs:

  build:

    runs-on: ubuntu-latest

    steps:
      - name: Checkout
        uses: actions/checkout@v4
        with:
          submodules: recursive

      - name: Docker meta
        id: meta
        uses: docker/metadata-action@v5
        with:
          # list of Docker images to use as base name for tags
          images: |
            dessimozlab/fastoma
          # generate Docker tags based on the following events/attributes
          tags: |
            type=schedule
            type=ref,event=branch
            type=ref,event=pr
            type=semver,pattern={{version}}
            type=semver,pattern={{major}}.{{minor}}
            type=semver,pattern={{major}}
            type=sha

      - name: Set up QEMU
        uses: docker/setup-qemu-action@v3

      - name: Set up Docker Buildx
        uses: docker/setup-buildx-action@v3

      - name: Build and export to docker for testing
        uses: docker/build-push-action@v6
        with:
          context: .
          load: true
          tags: ${{ env.TEST_TAG }}

      #- name: Test
      #  run: |
      #    docker run --rm -i -v $PWD/tests:/input -v $PWD/tests/:/reads -v $PWD/output:/out -v $PWD/run:/run ${{ env.TEST_TAG }} --tree --standalone_path /input/marker_genes --dna_reference /input/cds-marker_genes.fasta.gz --reads /reads/sample_1.fastq --output_path /out
      #    if [ ! -f output/tree_sample_1.nwk ] ; then exit 1; fi

      - name: Login to DockerHub
        uses: docker/login-action@v3
        with:
          username: ${{ secrets.DOCKER_HUB_USERNAME }}
          password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}

      - name: Build and push
        uses: docker/build-push-action@v6
        with:
          context: .
          platforms: linux/amd64,linux/arm64
          push: true
          #${{ github.event_name != 'push' && github.event_name != 'pull_request' }}
          tags: ${{ steps.meta.outputs.tags }}
          labels: ${{ steps.meta.outputs.labels }}