From b735dc6ba6ab1de7324e123e1ebb472f6bcfc415 Mon Sep 17 00:00:00 2001 From: sina Date: Mon, 11 Dec 2023 13:38:40 +0100 Subject: [PATCH] check_input adds internal node name. Input to process hog_big/rest is species_tree_checked --- FastOMA.nf | 4 ++-- FastOMA/__init__.py | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/FastOMA.nf b/FastOMA.nf index 92f9e44..86c28df 100644 --- a/FastOMA.nf +++ b/FastOMA.nf @@ -315,8 +315,8 @@ workflow { (rhogs_rest_batches, rhogs_big_batches) = batch_roothogs(omamer_rhogs) - (pickle_big_rhog, msa_out_big, genetrees_out_rest) = hog_big(rhogs_big_batches.flatten(), species_tree) - (pickle_rest_rhog, msas_out_rest, genetrees_out_test) = hog_rest(rhogs_rest_batches.flatten(), species_tree) + (pickle_big_rhog, msa_out_big, genetrees_out_rest) = hog_big(rhogs_big_batches.flatten(), species_tree_checked_) + (pickle_rest_rhog, msas_out_rest, genetrees_out_test) = hog_rest(rhogs_rest_batches.flatten(), species_tree_checked_) channel.empty().concat(pickle_big_rhog, pickle_rest_rhog).set{ all_rhog_pickle } (orthoxml_file, OrthologousGroupsFasta, OrthologousGroups_tsv, rootHOGs_tsv) = collect_subhogs(all_rhog_pickle.collect(), gene_id_dic_xml, omamer_rhogs, species_tree) diff --git a/FastOMA/__init__.py b/FastOMA/__init__.py index 81e013c..669ff35 100644 --- a/FastOMA/__init__.py +++ b/FastOMA/__init__.py @@ -1,3 +1,3 @@ __packagename__ = "FastOMA" -__version__ = "0.1.5.3" +__version__ = "0.1.5.5"