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requirements.atacFlow.yml
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requirements.atacFlow.yml
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name: atacFlow
channels:
- intel
- bioconda
- conda-forge
- defaults
- r
dependencies:
- argh=0.26.1=py27_0
- bcftools=1.9=h4da6232_0
- bedtools=2.27.1=he941832_2
- bioconductor-biocgenerics=0.18.0=r3.2.2_0
- bioconductor-biocparallel=1.4.3=r3.2.2_0
- bioconductor-biostrings=2.38.4=0
- bioconductor-genomeinfodb=1.6.3=0
- bioconductor-genomicranges=1.22.4=0
- bioconductor-iranges=2.4.8=0
- bioconductor-rsamtools=1.22.0=r3.2.2_1
- bioconductor-s4vectors=0.8.11=0
- bioconductor-xvector=0.10.0=1
- bioconductor-zlibbioc=1.16.0=r3.2.2_1
- bowtie2=2.3.4.2=py27h2d50403_0
- bx-python=0.8.2=py27h355e19c_0
- cutadapt=1.9.1=py27_0
- fisher=0.1.4=py27h24bf2e0_1
- gffutils=0.9=py_1
- ghostscript=9.18=1
- gnuplot=4.6.0=1
- htslib=1.7=0
- libdeflate=1.0=h470a237_0
- macs2=2.1.1.20160309=py27h7eb728f_3
- metaseq=0.5.6=py27_0
- mysql-connector-c=6.1.6=2
- phantompeakqualtools=1.2=0
- picard=2.18.12=0
- preseq=2.0.3=h26b358d_2
- pybedtools=0.7.10=py27_2
- pyfaidx=0.5.4.1=py_0
- pysam=0.14.1=py27hae42fb6_1
- r-catools=1.17.1=r3.2.2_0
- r-futile.logger=1.4.1=r3.2.2_0
- r-futile.options=1.0.0=r3.2.2_0
- r-lambda.r=1.1.7=r3.2.2_0
- r-snow=0.4_1=r3.2.2_0
- r-snowfall=1.84_6.1=r3.2.2_0
- r-spp=1.13=r3.2.2_0
- sambamba=0.6.6=2
- samtools=1.7=1
- simplejson=3.8.1=py27_0
- ucsc-bedclip=366=h5eb252a_0
- ucsc-bedgraphtobigwig=366=h5eb252a_0
- ucsc-bedtobigbed=366=h5eb252a_0
- ucsc-bigwigaverageoverbed=366=h5eb252a_0
- ucsc-bigwiginfo=366=h5eb252a_0
- ucsc-fetchchromsizes=366=h5eb252a_0
- ucsc-twobittofa=366=h5eb252a_0
- ucsc-wigtobigwig=366=h5eb252a_0
- argcomplete=1.9.4=py27_0
- biopython=1.72=py27_0
- curl=7.61.0=h93b3f91_1
- expat=2.2.5=hfc679d8_2
- gettext=0.19.8.1=h5e8e0c9_1
- glib=2.55.0=h464dc38_2
- graphviz=2.38.0=0
- krb5=1.14.6=0
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=hdf63c60_3
- libgfortran=3.0.0=1
- libiconv=1.15=h470a237_3
- libssh2=1.8.0=h5b517e9_2
- libstdcxx-ng=7.2.0=hdf63c60_3
- libtool=2.4.6=h470a237_2
- lzo=2.10=0
- ncurses=6.1=hfc679d8_1
- openblas=0.2.20=8
- pcre=8.41=hfc679d8_3
- perl=5.26.2=h470a237_0
- pigz=2.3.4=0
- python-dateutil=2.6.1=py27_0
- python-lzo=1.11=py27_0
- readline=7.0=haf1bffa_1
- _r-mutex=1.0.0=anacondar_1
- blas=1.0=mkl
- gsl=2.2.1=h0c605f7_3
- harfbuzz=0.9.39=1
- openjdk=8.0.121=1
- pango=1.39.0=0
- r=3.2.2=0
- r-base=3.2.2=0
- r-bitops=1.0_6=r3.2.2_1a
- r-boot=1.3_17=r3.2.2_0a
- r-class=7.3_14=r3.2.2_0a
- r-cluster=2.0.3=r3.2.2_0a
- r-codetools=0.2_14=r3.2.2_0a
- r-foreign=0.8_66=r3.2.2_0a
- r-kernsmooth=2.23_15=r3.2.2_0a
- r-lattice=0.20_33=r3.2.2_0a
- r-mass=7.3_45=r3.2.2_0a
- r-matrix=1.2_2=r3.2.2_0a
- r-mgcv=1.8_9=r3.2.2_0a
- r-nlme=3.1_122=r3.2.2_0a
- r-nnet=7.3_11=r3.2.2_0a
- r-recommended=3.2.2=r3.2.2_0
- r-rpart=4.1_10=r3.2.2_0a
- r-spatial=7.3_11=r3.2.2_0a
- r-survival=2.38_3=r3.2.2_0a
- boost=1.65.1=py27_intel_1
- bzip2=1.0.6=intel_14
- cairo=1.12.18=intel_6
- cycler=0.10.0=py27_intel_5
- cython=0.28.2=py27_intel_4
- daal=2018.0.3.20180405=0
- fontconfig=2.11.1=intel_7
- freetype=2.5.5=intel_9
- functools32=3.2.3.2=py27_intel_5
- icc_rt=2018.0.3=intel_0
- icu=59.1=intel_0
- intelpython=2018.0.3=0
- intelpython2_core=2018.0.3=0
- jinja2=2.9.6=py27_intel_0
- jpeg=9c=intel_0
- libffi=3.2.1=intel_8
- libpng=1.6.34=intel_1
- libtiff=4.0.9=intel_2
- libuuid=1.0.3=intel_2
- libxml2=2.9.5=intel_0
- markupsafe=1.0=py27_intel_0
- matplotlib=2.0.0=py27_intel_0
- mkl=2018.0.3=intel_1
- mkl_fft=1.0.2=np114py27_intel_0
- mkl_random=1.0.1=np114py27_intel_0
- numexpr=2.6.4=np114py27_intel_0
- numpy=1.14.3=py27_intel_0
- openmp=2018.0.3=intel_0
- openssl=1.0.2o=intel_0
- pandas=0.22.0=np114py27_intel_4
- pip=9.0.1=py27_intel_0
- pixman=0.32.6=intel_6
- pycairo=1.10.0=py27_intel_5
- pydaal=2018.0.3.20180405=np114py27_intel_0
- pyparsing=2.2.0=py27_intel_0
- python=2.7.14=intel_6
- pytz=2018.4=py27_intel_0
- pyyaml=3.12=py27_intel_3
- scikit-learn=0.19.1=np114py27_intel_29
- scipy=1.0.1=np114py27_intel_3
- setuptools=27.2.0=py27_intel_0
- six=1.10.0=py27_intel_8
- sqlite=3.23.1=intel_0
- tbb=2018.0.4=0
- tbb4py=2018.0.4=py27_0
- tcl=8.6.4=intel_19
- tk=8.6.4=intel_26
- wheel=0.31.0=py27_intel_0
- xz=5.2.3=intel_0
- yaml=0.1.7=intel_0
- zlib=1.2.11=intel_3
prefix: /home/asd2007/miniconda3/envs/atacFlow