From e0f5bcdf052c267472c70ae5097e6474d15ef2e2 Mon Sep 17 00:00:00 2001
From: Tatiana Gurbich <tgurbich@gmail.com>
Date: Tue, 23 Jul 2024 11:02:29 +0100
Subject: [PATCH] Added a fix for collection date format

---
 genomeuploader/genome_upload.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/genomeuploader/genome_upload.py b/genomeuploader/genome_upload.py
index 9763605..84dd092 100755
--- a/genomeuploader/genome_upload.py
+++ b/genomeuploader/genome_upload.py
@@ -480,6 +480,8 @@ def combine_ENA_info(genomeInfo, ENADict):
             collectionDate = collectionList[0]
             if multipleElementSet(collectionList):
                 collectionDate = "not provided"
+            if collectionDate.lower() == "not applicable":
+                collectionDate = "not provided"
             genomeInfo[g]["collectionDate"] = collectionDate
 
             country = countryList[0]