diff --git a/README.md b/README.md index 6947509..c7f8578 100755 --- a/README.md +++ b/README.md @@ -16,7 +16,7 @@ With columns indicating: * _stats_generation_software_: software_vX.X * _completeness_: `float` * _contamination_: `float` - * _rRNA_presence_: `True/False` if 5S, 16S, and 23S genes, and at least 18 tRNA genes, have been detected in the genome + * _rRNA_presence_: `True/False` if all among 5S, 16S, and 23S genes, and at least 18 tRNA genes, have been detected in the genome * _NCBI_lineage_: full NCBI lineage, either in tax ids (`integers`) or `strings`. Format: x;y;z;... * _metagenome_: needs to be listed in the taxonomy tree [here]() (you might need to press "Tax tree - Show" in the right most section of the page) * _co-assembly_: `True/False`, whether the genome was generated from a co-assembly. N.B. the script only supports co-assemblies generated from the same project. @@ -53,7 +53,7 @@ conda activate genome_uploader You can generate pre-upload files with: ```bash -python genome_upload.py -u UPLOAD_STUDY --genome_info METADATA_FILE (--mags | --bins) --webin WEBIN_ID --password PASSWORD --centre_name CENTRE_NAME [--out] [--force] [--live] [--tpa] +python genomeuploader/genome_upload.py -u UPLOAD_STUDY --genome_info METADATA_FILE (--mags | --bins) --webin WEBIN_ID --password PASSWORD --centre_name CENTRE_NAME [--out] [--force] [--live] [--tpa] ``` where