ff2gff3 is a Java library for converting EMBL flat files to GFF3 format. It uses sequencetools to read the flat file.
To access the sequencetools library, create the gradle.properties file and add your private
EBI gitlab token in the following format.
gitlab_private_token=<token>
Conversion rules and Assumptions are added to the code under // Rule: and // Assumption: comments for now.