diff --git a/efo-base.owl b/efo-base.owl
index 1342ce3f..d26c5ba1 100644
--- a/efo-base.owl
+++ b/efo-base.owl
@@ -40,7 +40,7 @@
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the
License.
www.apache.org/licenses/LICENSE-2.0
- 2024-04-12
+ 2024-04-15
3.64.0
@@ -20287,7 +20287,7 @@ A Daudi Burkitt's lymphoma cell line is bearer of Daudi Burkitt's lymp
ductal adenocarcinoma
DOID:3008
- NCIT:C4017
+ NCIT:C4017
@@ -24349,7 +24349,7 @@ label: abdominal cavity
lymphoblastic leukemia, acute
- MONDO:patterns/acute
+ MONDO:patterns/acute
@@ -24830,7 +24830,7 @@ label: abdominal cavity
monocytic leukemia, acute
- MONDO:patterns/acute
+ MONDO:patterns/acute
@@ -25429,7 +25429,7 @@ label: abdominal cavity
myeloid leukemia, acute
- MONDO:patterns/acute
+ MONDO:patterns/acute
@@ -35226,7 +35226,7 @@ New Label : Chordoma
gastritis (disease), chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -35701,7 +35701,7 @@ New Label : Chronic granulomatous disease
myeloid leukemia, chronic
DOID:8552
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
MTH:NOCODE
@@ -36006,7 +36006,7 @@ New Label : Chronic granulomatous disease
obstructive lung disease, chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -36136,7 +36136,7 @@ New Label : Chronic granulomatous disease
pancreatitis, chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -113997,7 +113997,7 @@ A Jiyoye is bearer of a Burkitt's lymphoma.
myeloproliferative neoplasm, chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -131110,7 +131110,7 @@ A MIN6 derives from a mus musculus.
sarcoma of body of uterus
- MONDO:patterns/sarcoma
+ MONDO:patterns/sarcoma
@@ -132220,7 +132220,7 @@ A MIN6 derives from a mus musculus.
sarcoma of mammalian vulva
- MONDO:patterns/sarcoma
+ MONDO:patterns/sarcoma
@@ -168275,7 +168275,7 @@ label: aortic valve
kidney disease, chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -184213,7 +184213,7 @@ New Label : Moyamoya disease
myeloproliferative neoplasm, chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -210575,7 +210575,7 @@ Small-inducible cytokine A11.
lung NET
- MONDO:patterns/neuroendocrine_neoplasm
+ MONDO:patterns/neuroendocrine_neoplasm
@@ -210601,13 +210601,13 @@ Small-inducible cytokine A11.
lung neuroendocrine tumor
MONDO:patterns/location
- MONDO:patterns/neuroendocrine_neoplasm
+ MONDO:patterns/neuroendocrine_neoplasm
lung neuroendocrine tumor, well differentiated, low or intermediate grade
- MONDO:patterns/neuroendocrine_neoplasm
+ MONDO:patterns/neuroendocrine_neoplasm
@@ -210619,7 +210619,7 @@ Small-inducible cytokine A11.
neuroendocrine neoplasm of lung
- MONDO:patterns/neuroendocrine_neoplasm
+ MONDO:patterns/neuroendocrine_neoplasm
NCIT:C5670
@@ -226764,7 +226764,7 @@ Sira's response: seperate out HCA and HCS. This is different from ERO where
peritoneal mesothelioma (disease), malignant
- MONDO:patterns/malignant
+ MONDO:patterns/malignant
@@ -249909,7 +249909,7 @@ Use: http://purl.obolibrary.org/obo/CHEBI_22676
periodontitis, chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -257189,7 +257189,7 @@ Use: http://purl.obolibrary.org/obo/CHEBI_22676
bronchitis, chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -349307,7 +349307,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var
Chronic form of venous insufficiency (disease).
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -349331,7 +349331,7 @@ of diseased coronary vessels at the time of a catheterization procedure. The var
venous insufficiency (disease), chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -358661,7 +358661,7 @@ label: granulocyte colony-stimulating factor measurement
interstitial cystitis, chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -361807,7 +361807,7 @@ label: granulocyte colony-stimulating factor measurement
breast phyllodes tumor, malignant
- MONDO:patterns/malignant
+ MONDO:patterns/malignant
@@ -535566,7 +535566,7 @@ A syndrome typically consisting of angina (cardiac chest pain) at rest that occu
cystitis, chronic
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -535606,7 +535606,7 @@ A syndrome typically consisting of angina (cardiac chest pain) at rest that occu
Chronic form of sinusitis.
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -535657,7 +535657,7 @@ A syndrome typically consisting of angina (cardiac chest pain) at rest that occu
sinusitis, chronic
MONDO:design_pattern
- MONDO:patterns/chronic
+ MONDO:patterns/chronic
@@ -549779,7 +549779,7 @@ Label : Disorder of carbohydrate metabolism
malignant biphasic mesothelioma, malignant
- MONDO:patterns/malignant
+ MONDO:patterns/malignant
@@ -553789,13 +553789,13 @@ Label : Disorder of carbohydrate metabolism
caecum NET G1
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
caecum carcinoid tumor
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
NCIT:C5501
@@ -553820,7 +553820,7 @@ Label : Disorder of carbohydrate metabolism
caecum neuroendocrine tumor, well differentiated, low grade
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -553898,7 +553898,7 @@ Label : Disorder of carbohydrate metabolism
grade 1 neuroendocrine neoplasm of caecum
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -559070,14 +559070,14 @@ Label : Disorder of carbohydrate metabolism
colon NET G1
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
NCIT:C5497
colon carcinoid tumor
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
NCIT:C5497
@@ -559120,7 +559120,7 @@ Label : Disorder of carbohydrate metabolism
colon neuroendocrine tumor, well differentiated, low grade
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -559138,7 +559138,7 @@ Label : Disorder of carbohydrate metabolism
grade 1 neuroendocrine neoplasm of colon
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -560084,13 +560084,13 @@ Label : Disorder of carbohydrate metabolism
colorectum NET G1
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
colorectum carcinoid tumor
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -560102,13 +560102,13 @@ Label : Disorder of carbohydrate metabolism
colorectum neuroendocrine tumor, well differentiated, low grade
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
grade 1 neuroendocrine neoplasm of colorectum
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -570478,19 +570478,19 @@ Label : Disorder of carbohydrate metabolism
grade 1 neuroendocrine neoplasm of stomach
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
stomach NET G1
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
stomach carcinoid tumor
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -570502,7 +570502,7 @@ Label : Disorder of carbohydrate metabolism
stomach neuroendocrine tumor, well differentiated, low grade
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -574506,7 +574506,7 @@ Label : Disorder of carbohydrate metabolism
grade 1 neuroendocrine neoplasm of ileum
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -574548,13 +574548,13 @@ Label : Disorder of carbohydrate metabolism
ileum NET G1
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
ileum carcinoid tumor
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -574578,7 +574578,7 @@ Label : Disorder of carbohydrate metabolism
ileum neuroendocrine tumor, well differentiated, low grade
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -575500,7 +575500,7 @@ Label : Disorder of carbohydrate metabolism
grade 1 neuroendocrine neoplasm of jejunum
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -575536,13 +575536,13 @@ Label : Disorder of carbohydrate metabolism
jejunum NET G1
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
jejunum carcinoid tumor
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -575566,7 +575566,7 @@ Label : Disorder of carbohydrate metabolism
jejunum neuroendocrine tumor, well differentiated, low grade
- MONDO:patterns/neuroendocrine_neoplasm_grade1
+ MONDO:patterns/neuroendocrine_neoplasm_grade1
@@ -624525,7 +624525,7 @@ These disorders are common in people of all ages and races. They are characteriz
childhood neoplasm, malignant
- MONDO:patterns/malignant
+ MONDO:patterns/malignant
@@ -679257,7 +679257,7 @@ Label: Moebius syndrome
pulmonary sulcus neoplasm, malignant
- MONDO:patterns/malignant
+ MONDO:patterns/malignant
@@ -724599,7 +724599,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
Orphanet:98823
SCTID:127225006
UMLS:C0023480
- CMML
+ CMML
chronic myelomonocytic leukaemia (CMML)
chronic myelomonocytic leukemia
chronic myelomonocytic leukemia (CMML)
@@ -724750,7 +724750,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
- CMML
+ CMML
NCIT:C3178
OMIM:607785
Orphanet:98823
@@ -724759,7 +724759,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
- CMML
+ CMML
NCIT:C3178
Orphanet:98823
@@ -733165,7 +733165,7 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
neuroendocrine neoplasm of small intestine
MONDO:design_pattern
- MONDO:patterns/neuroendocrine_neoplasm
+ MONDO:patterns/neuroendocrine_neoplasm
@@ -733195,7 +733195,7 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
small intestine NET
- MONDO:patterns/neuroendocrine_neoplasm
+ MONDO:patterns/neuroendocrine_neoplasm
@@ -733221,13 +733221,13 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
small intestine neuroendocrine tumor
DOID:4434
- MONDO:patterns/neuroendocrine_neoplasm
+ MONDO:patterns/neuroendocrine_neoplasm
small intestine neuroendocrine tumor, well differentiated, low or intermediate grade
- MONDO:patterns/neuroendocrine_neoplasm
+ MONDO:patterns/neuroendocrine_neoplasm
@@ -733251,7 +733251,7 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
small intestine neuroendocrine tumor, well differentiated, low or intermediate grade
- MONDO:patterns/neuroendocrine_neoplasm
+ MONDO:patterns/neuroendocrine_neoplasm
diff --git a/src/ontology/components/subclasses.owl b/src/ontology/components/subclasses.owl
index b313baa7..bbabab16 100644
--- a/src/ontology/components/subclasses.owl
+++ b/src/ontology/components/subclasses.owl
@@ -626,6 +626,14 @@
+
+
+
+
+
+
+
+
diff --git a/src/ontology/imports/oba_bot.owl b/src/ontology/imports/oba_bot.owl
index 793cda6b..4cf3e746 100644
--- a/src/ontology/imports/oba_bot.owl
+++ b/src/ontology/imports/oba_bot.owl
@@ -764122,6 +764122,49 @@ For example, A and B may be gene products and binding of B by A positively regul
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ The sound quality of a vocal organ.
+ https://orcid.org/0000-0001-6757-4744
+ PMID:37294764
+ sound quality of vocal organ
+ voice quality trait
+
+
+
+
+ The sound quality of a vocal organ.
+ AUTO:patterns/patterns/entity_attribute
+
+
+
+
+ sound quality of vocal organ
+ AUTO:patterns/patterns/entity_attribute
+
+
+
+
@@ -806033,6 +806076,15 @@ See https://github.com/pato-ontology/pato/issues/331.
+
+
+
+
+ sound quality
+
+
+
+
@@ -1200830,6 +1200882,36 @@ See https://github.com/pato-ontology/pato/issues/331.
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/src/ontology/imports/oba_import.owl b/src/ontology/imports/oba_import.owl
index df13dca9..52ee53cb 100644
--- a/src/ontology/imports/oba_import.owl
+++ b/src/ontology/imports/oba_import.owl
@@ -124885,6 +124885,36 @@ A continuant cannot be part of an occurrent: use 'participates in'. An
+
+
+
+
+
+
+
+
+
+ The sound quality of a vocal organ.
+ https://orcid.org/0000-0001-6757-4744
+ PMID:37294764
+ sound quality of vocal organ
+ voice quality trait
+
+
+
+
+ The sound quality of a vocal organ.
+ AUTO:patterns/patterns/entity_attribute
+
+
+
+
+ sound quality of vocal organ
+ AUTO:patterns/patterns/entity_attribute
+
+
+
+
@@ -172418,6 +172448,15 @@ A continuant cannot be part of an occurrent: use 'participates in'. An
+
+
+
+
+ vocal organ
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Any organ that is the primary organ of vocalization behavior. Examples: The laryngeal vocal cord (humans), the syrinx (birds).
+ uberon
+ UBERON:0034681
+ vocal organ
+
+
+
+
+ Any organ that is the primary organ of vocalization behavior. Examples: The laryngeal vocal cord (humans), the syrinx (birds).
+ http://orcid.org/0000-0002-6601-2165
+
+
+
+
diff --git a/src/ontology/imports/uberon_terms.txt b/src/ontology/imports/uberon_terms.txt
index 0e68a9de..f68c3ee5 100644
--- a/src/ontology/imports/uberon_terms.txt
+++ b/src/ontology/imports/uberon_terms.txt
@@ -1010,6 +1010,7 @@ http://purl.obolibrary.org/obo/UBERON_0019189
http://purl.obolibrary.org/obo/UBERON_0019207
http://purl.obolibrary.org/obo/UBERON_0022353
http://purl.obolibrary.org/obo/UBERON_0024151
+http://purl.obolibrary.org/obo/UBERON_0034681
http://purl.obolibrary.org/obo/UBERON_0034705
http://purl.obolibrary.org/obo/UBERON_0034713
http://purl.obolibrary.org/obo/UBERON_0034769
diff --git a/src/ontology/iri_dependencies/oba_terms.txt b/src/ontology/iri_dependencies/oba_terms.txt
index ecb2ea57..fd5c1cda 100644
--- a/src/ontology/iri_dependencies/oba_terms.txt
+++ b/src/ontology/iri_dependencies/oba_terms.txt
@@ -10148,3 +10148,5 @@ http://purl.obolibrary.org/obo/OBA_2040039
http://purl.obolibrary.org/obo/OBA_2040054
http://purl.obolibrary.org/obo/OBA_2040133
http://purl.obolibrary.org/obo/CHEBI_45863
+http://purl.obolibrary.org/obo/OBA_2050418
+http://purl.obolibrary.org/obo/UBERON_0034681
diff --git a/src/ontology/iri_dependencies/uberon_terms.txt b/src/ontology/iri_dependencies/uberon_terms.txt
index a2ea980f..376629b6 100644
--- a/src/ontology/iri_dependencies/uberon_terms.txt
+++ b/src/ontology/iri_dependencies/uberon_terms.txt
@@ -1175,3 +1175,4 @@ http://purl.obolibrary.org/obo/UBERON_0036267
http://purl.obolibrary.org/obo/UBERON_0036268
http://purl.obolibrary.org/obo/UBERON_0036269
http://purl.obolibrary.org/obo/UBERON_0036301
+http://purl.obolibrary.org/obo/UBERON_0034681
diff --git a/src/templates/subclasses.csv b/src/templates/subclasses.csv
index 93ff7723..e57453a4 100644
--- a/src/templates/subclasses.csv
+++ b/src/templates/subclasses.csv
@@ -4883,4 +4883,5 @@ OBA:2040085,GO:0097329
OBA:2040086,GO:0009410
OBA:2040089,GO:0036277
OBA:2040091,EFO:0005657
-HP:0012828,EFO:0010569
\ No newline at end of file
+HP:0012828,EFO:0010569
+OBA:2050418,BFO:0000019