Skip to content

Commit

Permalink
Imported 3 new OBA terms
Browse files Browse the repository at this point in the history
  • Loading branch information
@ar-ibrahim
ar-ibrahim committed Dec 12, 2023
1 parent f344111 commit cd7fa20
Show file tree
Hide file tree
Showing 15 changed files with 289,731 additions and 277,807 deletions.
318 changes: 166 additions & 152 deletions efo-base.owl
View file

Large diffs are not rendered by default.

22 changes: 22 additions & 0 deletions src/ontology/components/subclasses.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -173,6 +173,22 @@



<!-- http://purl.obolibrary.org/obo/OBA_2050351 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_2050351">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0004324"/>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBA_2050352 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_2050352">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0009410"/>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBA_VT0010487 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_VT0010487">
Expand Down Expand Up @@ -38738,6 +38754,12 @@



<!-- http://www.ebi.ac.uk/efo/EFO_0004324 -->

<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0004324"/>



<!-- http://www.ebi.ac.uk/efo/EFO_0004647 -->

<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0004647"/>
Expand Down
24 changes: 9 additions & 15 deletions src/ontology/imports/cl_import.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -437,7 +437,6 @@ Covers cells actively being cultured or stored in a quiescent state for future u
<oboInOwl:hasDbXref>CALOHA:TS-2191</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FBbt:00057012</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:67343</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MA:0000388</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MESH:D010063</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>mature oocyte</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>ovum</oboInOwl:hasExactSynonym>
Expand Down Expand Up @@ -509,7 +508,6 @@ Covers cells actively being cultured or stored in a quiescent state for future u
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<oboInOwl:hasDbXref>BTO:0000725</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>CALOHA:TS-0448</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:70337</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:86475</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MESH:D006412</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>VHOG:0001485</oboInOwl:hasDbXref>
Expand Down Expand Up @@ -1598,7 +1596,6 @@ Covers cells actively being cultured or stored in a quiescent state for future u
<oboInOwl:hasDbXref>BTO:0000078</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>BTO:0000962</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:54539</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:54540</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>brain-resident macrophage</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>hortega cells</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>microgliocyte</oboInOwl:hasExactSynonym>
Expand Down Expand Up @@ -1663,11 +1660,11 @@ Covers cells actively being cultured or stored in a quiescent state for future u
<oboInOwl:hasDbXref>BTO:0000443</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>CALOHA:TS-0012</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:63880</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>adipocyte</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>adipose cell</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>fat cell</oboInOwl:hasExactSynonym>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas"/>
<rdfs:label>fat cell</rdfs:label>
<rdfs:label>adipocyte</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000136"/>
Expand Down Expand Up @@ -2180,7 +2177,6 @@ The modern definition of neurosecretion has evolved to include the release of an
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000202">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000101"/>
<obo:IAO_0000115>A mechanoreceptor cell of the auditory or vestibular system that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system.</obo:IAO_0000115>
<oboInOwl:hasDbXref>FMA:62364</oboInOwl:hasDbXref>
<oboInOwl:hasRelatedSynonym>auditory receptor cell</oboInOwl:hasRelatedSynonym>
<rdfs:comment>In mammals these cells are located in the organ of Corti.</rdfs:comment>
<rdfs:label>auditory hair cell</rdfs:label>
Expand Down Expand Up @@ -2348,6 +2344,7 @@ The modern definition of neurosecretion has evolved to include the release of an
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000738"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000766"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000842"/>
<obo:IAO_0000115>A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells.</obo:IAO_0000115>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<oboInOwl:hasDbXref>BTO:0000801</oboInOwl:hasDbXref>
Expand Down Expand Up @@ -2837,6 +2834,7 @@ The modern definition of neurosecretion has evolved to include the release of an
<!-- http://purl.obolibrary.org/obo/CL_0000451 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000451">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000738"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000842"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/CL_0000542"/>
Expand Down Expand Up @@ -4494,7 +4492,6 @@ The modern definition of neurosecretion has evolved to include the release of an
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_1000497"/>
<obo:IAO_0000115>A specialized kidney epithelial cell, contained within a glomerulus, that contains &quot;feet&quot; that interdigitate with the &quot;feet&quot; of other podocytes.</obo:IAO_0000115>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0002-1773-2692"/>
<oboInOwl:hasBroadSynonym>epithelial cell of visceral layer of glomerular capsule</oboInOwl:hasBroadSynonym>
<oboInOwl:hasDbXref>BTO:0002295</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:70967</oboInOwl:hasDbXref>
Expand Down Expand Up @@ -4653,7 +4650,6 @@ The modern definition of neurosecretion has evolved to include the release of an
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000034"/>
<obo:IAO_0000115>A stem cell that can give rise to cell types of the body other than those of the germ-line.</obo:IAO_0000115>
<oboInOwl:hasDbXref>CALOHA:TS-2086</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:63368</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MESH:D053687</oboInOwl:hasDbXref>
<rdfs:label>somatic stem cell</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -5119,6 +5115,7 @@ The modern definition of neurosecretion has evolved to include the release of an
<!-- http://purl.obolibrary.org/obo/CL_0000778 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000778">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000092"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000842"/>
<obo:IAO_0000115>A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts.</obo:IAO_0000115>
Expand Down Expand Up @@ -5530,7 +5527,6 @@ The modern definition of neurosecretion has evolved to include the release of an
<oboInOwl:hasBroadSynonym>killer T-cell</oboInOwl:hasBroadSynonym>
<oboInOwl:hasBroadSynonym>killer T-lymphocyte</oboInOwl:hasBroadSynonym>
<oboInOwl:hasDbXref>CALOHA:TS-0190</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:70573</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>CD8-positive, alpha-beta cytotoxic T lymphocyte</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>CD8-positive, alpha-beta cytotoxic T-cell</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>CD8-positive, alpha-beta cytotoxic T-lymphocyte</oboInOwl:hasExactSynonym>
Expand Down Expand Up @@ -6881,7 +6877,6 @@ The modern definition of neurosecretion has evolved to include the release of an
<!-- http://purl.obolibrary.org/obo/CL_0000860 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000860">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000576"/>
<obo:IAO_0000115>A monocyte that responds rapidly to microbial stimuli by secreting cytokines and antimicrobial factors and which is characterized by high expression of CCR2 in both rodents and humans, negative for the lineage markers CD3, CD19, and CD20, and of larger size than non-classical monocytes.</obo:IAO_0000115>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
Expand Down Expand Up @@ -10787,7 +10782,6 @@ The modern definition of neurosecretion has evolved to include the release of an
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000037"/>
<obo:IAO_0000115>CD133-positive hematopoietic stem cell is a hematopoietic stem cell that is CD34-positive, CD90-positive, and CD133-positive.</obo:IAO_0000115>
<oboInOwl:hasDbXref>CALOHA:TS-0448</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:86475</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>CD133-positive hematopoietic stem cell</oboInOwl:hasExactSynonym>
<rdfs:comment>Cell markers are associated with human hematopoietic stem cells. Originally described in the dendritic cell ontology (DC_CL:0000035)(PMID:19243617).</rdfs:comment>
<rdfs:label>CD34-positive, CD38-negative hematopoietic stem cell</rdfs:label>
Expand Down Expand Up @@ -13396,6 +13390,7 @@ The modern definition of neurosecretion has evolved to include the release of an
<oboInOwl:creation_date>2010-08-26T10:59:44Z</oboInOwl:creation_date>
<oboInOwl:hasDbXref>BTO:0004632</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:70970</oboInOwl:hasDbXref>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/cl#kidney_upper_slim"/>
<rdfs:label>glomerular endothelial cell</rdfs:label>
</owl:Class>
<owl:Axiom>
Expand Down Expand Up @@ -13783,7 +13778,6 @@ The modern definition of neurosecretion has evolved to include the release of an
<oboInOwl:creation_date>2010-09-15T03:39:21Z</oboInOwl:creation_date>
<oboInOwl:hasDbXref>CALOHA:TS-0263</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:82840</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>FMA:82841</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>WBbt:0007028</oboInOwl:hasDbXref>
<rdfs:label>embryonic cell (metazoa)</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -15672,7 +15666,6 @@ The modern definition of neurosecretion has evolved to include the release of an
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<obo:IAO_0000115>A progenitor cell of the central nervous system that can differentiate into oligodendrocytes or type-2 astrocytes. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons.</obo:IAO_0000115>
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0002-1773-2692"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0003-1980-3228"/>
<oboInOwl:creation_date>2010-11-10T02:51:34Z</oboInOwl:creation_date>
<oboInOwl:hasBroadSynonym>oligodendrocyte-type 2 astrocyte (O-2A) progenitor cell</oboInOwl:hasBroadSynonym>
Expand Down Expand Up @@ -16180,6 +16173,7 @@ The modern definition of neurosecretion has evolved to include the release of an
<!-- http://purl.obolibrary.org/obo/CL_0002476 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0002476">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000842"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000864"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000988"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0002092"/>
Expand Down Expand Up @@ -16799,7 +16793,7 @@ The modern definition of neurosecretion has evolved to include the release of an

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0002617">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000136"/>
<obo:IAO_0000115>A fat cell that is part of the breast.</obo:IAO_0000115>
<obo:IAO_0000115>An adipocyte that is part of the breast.</obo:IAO_0000115>
<terms:contributor rdf:resource="https://orcid.org/0000-0003-1980-3228"/>
<oboInOwl:creation_date>2011-03-14T10:17:07Z</oboInOwl:creation_date>
<oboInOwl:hasDbXref>CALOHA:TS-2377</oboInOwl:hasDbXref>
Expand All @@ -16811,7 +16805,7 @@ The modern definition of neurosecretion has evolved to include the release of an
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0002617"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A fat cell that is part of the breast.</owl:annotatedTarget>
<owl:annotatedTarget>An adipocyte that is part of the breast.</owl:annotatedTarget>
<oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
</owl:Axiom>

Expand Down
Loading

0 comments on commit cd7fa20

Please sign in to comment.