diff --git a/src/ontology/efo-edit.owl b/src/ontology/efo-edit.owl index cfbc8516..e32d1a76 100644 --- a/src/ontology/efo-edit.owl +++ b/src/ontology/efo-edit.owl @@ -16983,6 +16983,10 @@ Declaration(Class(efo:EFO_0022596)) Declaration(Class(efo:EFO_0022597)) Declaration(Class(efo:EFO_0022598)) Declaration(Class(efo:EFO_0022599)) +Declaration(Class(efo:EFO_0022600)) +Declaration(Class(efo:EFO_0022601)) +Declaration(Class(efo:EFO_0022602)) +Declaration(Class(efo:EFO_0022603)) Declaration(Class(efo:EFO_0030000)) Declaration(Class(efo:EFO_0030001)) Declaration(Class(efo:EFO_0030002)) @@ -29547,7 +29551,7 @@ AnnotationAssertion(rdfs:label obo:RO_0001025 "located_in") AnnotationAssertion(rdfs:label obo:RO_0002104 "has_plasma_membrane_part") -# Object Property: obo:RO_0002160 (only_in_taxon) +# Object Property: obo:RO_0002160 (only in taxon) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20973947") obo:IAO_0000115 obo:RO_0002160 "S only_in_taxon T iff: S SubClassOf in_taxon only T") AnnotationAssertion(oboInOwl:hasDbXref obo:RO_0002160 "RO:0002160") @@ -204328,6 +204332,42 @@ AnnotationAssertion(rdfs:label efo:EFO_0022599 "DNA methylation"@en) SubClassOf(efo:EFO_0022599 obo:GO_0006139) SubClassOf(efo:EFO_0022599 obo:GO_0043412) +# Class: efo:EFO_0022600 (Parse Evercode Whole Transcriptome v1) + +AnnotationAssertion(Annotation(efo:definition_citation "https://www.biorxiv.org/content/10.1101/2022.08.27.505512v1.full") Annotation(efo:definition_citation "https://www.parsebiosciences.com") obo:IAO_0000115 efo:EFO_0022600 "Parse Evercode WT v1: Parse Biosciences single cell sequencing that utilizes combinatorial split-pool barcoding based off of SPLiT-seq.") +AnnotationAssertion(dc:creator efo:EFO_0022600 "Zoe May Pendlington") +AnnotationAssertion(dc:date efo:EFO_0022600 "2024-04-23T09:41:07Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022600 "Parse Evercode WT v1") +AnnotationAssertion(rdfs:label efo:EFO_0022600 "Parse Evercode Whole Transcriptome v1"@en) +SubClassOf(efo:EFO_0022600 efo:EFO_0022603) + +# Class: efo:EFO_0022601 (Parse Evercode Whole Transcriptome v2) + +AnnotationAssertion(Annotation(efo:definition_citation "https://www.biorxiv.org/content/10.1101/2022.08.27.505512v1.full") Annotation(efo:definition_citation "https://www.parsebiosciences.com") obo:IAO_0000115 efo:EFO_0022601 "Parse Evercode WT v2: Parse Biosciences single cell sequencing that utilizes combinatorial split-pool barcoding based off of SPLiT-seq.") +AnnotationAssertion(dc:creator efo:EFO_0022601 "Zoe May Pendlington") +AnnotationAssertion(dc:date efo:EFO_0022601 "2024-04-23T09:42:46Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022601 "Parse Evercode WT v2") +AnnotationAssertion(rdfs:label efo:EFO_0022601 "Parse Evercode Whole Transcriptome v2"@en) +SubClassOf(efo:EFO_0022601 efo:EFO_0022603) + +# Class: efo:EFO_0022602 (Parse Evercode Whole Transcriptome v3) + +AnnotationAssertion(Annotation(efo:definition_citation "https://www.biorxiv.org/content/10.1101/2022.08.27.505512v1.full") Annotation(efo:definition_citation "https://www.parsebiosciences.com") obo:IAO_0000115 efo:EFO_0022602 "Parse Evercode WT v3: Parse Biosciences single cell sequencing that utilizes combinatorial split-pool barcoding based off of SPLiT-seq.") +AnnotationAssertion(dc:creator efo:EFO_0022602 "Zoe May Pendlington") +AnnotationAssertion(dc:date efo:EFO_0022602 "2024-04-23T09:43:58Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022602 "Parse Evercode WT v3") +AnnotationAssertion(rdfs:label efo:EFO_0022602 "Parse Evercode Whole Transcriptome v3"@en) +SubClassOf(efo:EFO_0022602 efo:EFO_0022603) + +# Class: efo:EFO_0022603 (Parse Biosciences technology) + +AnnotationAssertion(Annotation(efo:definition_citation "https://www.biorxiv.org/content/10.1101/2022.08.27.505512v1.full") Annotation(efo:definition_citation "https://www.parsebiosciences.com/") obo:IAO_0000115 efo:EFO_0022603 "Parse Biosciences single cell sequencing that utilizes combinatorial split-pool barcoding based off of SPLiT-seq.") +AnnotationAssertion(dc:creator efo:EFO_0022603 "Zoe May Pendlington") +AnnotationAssertion(dc:date efo:EFO_0022603 "2024-04-23T09:45:32Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label efo:EFO_0022603 "Parse Biosciences technology"@en) +SubClassOf(efo:EFO_0022603 efo:EFO_0009919) +SubClassOf(efo:EFO_0022603 efo:EFO_0010183) + # Class: efo:EFO_0030000 (STARmap) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29930089") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0002-3090-9894") obo:IAO_0000115 efo:EFO_0030000 "STARmap is an image-based technology for 3D intact-tissue RNA sequencing, which integrates hydrogel-tissue chemistry, targeted signal amplification, and in situ sequencing.")