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make sure all the scheduled slurm jobs in scrontab have an error and output dir instead of using sportbot home dir by default.
among those jobs:
FTP SYNC (prod, dev)
/hps/software/users/parkinso/spot/gwas/prod/scripts/cron/ftp_sync_wrapper_slurm.sh
/hps/software/users/parkinso/spot/gwas/dev/scripts/cron/ftp_sync_wrapper_slurm.sh
Although the sbatch inside scrontab has defined --output and --error, there logs in the homes dir indicating another job is created, probably because the original sbatch starts another sbatch (although I cant see it in the file, maybe from the .py script that's called)
make sure all the scheduled slurm jobs in scrontab have an error and output dir instead of using sportbot home dir by default.
among those jobs:
/hps/software/users/parkinso/spot/gwas/prod/scripts/cron/ftp_sync_wrapper_slurm.sh
/hps/software/users/parkinso/spot/gwas/dev/scripts/cron/ftp_sync_wrapper_slurm.sh
Although the sbatch inside scrontab has defined --output and --error, there logs in the homes dir indicating another job is created, probably because the original sbatch starts another sbatch (although I cant see it in the file, maybe from the .py script that's called)
/hps/software/users/parkinso/spot/gwas/dev/scripts/cron/sumstats_service/submit_yaml_generation.sh
/hps/software/users/parkinso/spot/gwas/prod/scripts/cron/sumstats_service/submit_yaml_generation.sh
/hps/software/users/parkinso/spot/gwas/prod/sw/gwas-rabbitmq-listener/cancel-slurm-publication-import.sh
/hps/software/users/parkinso/spot/gwas/prod/sw/gwas-rabbitmq-listener/run-slurm-publication-import.sh
/hps/software/users/parkinso/spot/gwas/dev/scripts/cron/sumstats_service/submit_agg_email.sh
/hps/software/users/parkinso/spot/gwas/prod/scripts/cron/sumstats_service/submit_agg_email.sh
/hps/software/users/parkinso/spot/gwas/prod/sw/deposition_sync/run-slurm-sync-wrapper.sh
/hps/software/users/parkinso/spot/gwas/prod/sw/deposition_sync/run-slurm-sync-wrapper.sh unpublished
/hps/software/users/parkinso/spot/gwas/prod/sw/mapping-pipeline/run-slurm-scheduled-mapping.sh
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