From 6dc3d54f4eddc905764f0961301799538948c53f Mon Sep 17 00:00:00 2001 From: tcezard Date: Tue, 13 Jun 2023 11:53:29 +0100 Subject: [PATCH] Set the output folder parameter --- eva_assembly_ingestion/assembly_ingestion_job.py | 3 ++- requirements.txt | 2 +- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/eva_assembly_ingestion/assembly_ingestion_job.py b/eva_assembly_ingestion/assembly_ingestion_job.py index c0a72d2..6270d28 100644 --- a/eva_assembly_ingestion/assembly_ingestion_job.py +++ b/eva_assembly_ingestion/assembly_ingestion_job.py @@ -218,7 +218,8 @@ def check_remapping_required(self, source_assembly): def create_extraction_properties(self, output_file_path, source_assembly): properties = self.properties_generator.get_remapping_extraction_properties( taxonomy=self.taxonomy, - source_assembly=source_assembly + source_assembly=source_assembly, + output_folder='.', ) with open(output_file_path, 'w') as open_file: open_file.write(properties) diff --git a/requirements.txt b/requirements.txt index 6d8f271..2880952 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,4 +1,4 @@ -ebi-eva-common-pyutils==0.5.3 +ebi-eva-common-pyutils==0.5.5 pyyaml requests retry