Debugging: include preliminary job from separate file

.azure-pipelines.yml

@@ -15,6 +15,7 @@ pr:
     - Docs
     - .github/workflows/**
     - .azure-pipelines.yml
+    - .pre-commit-config.yaml
 
 jobs:
 - job:

.github/workflows/clang_sanitizers.yml

@@ -11,24 +11,8 @@ concurrency:
   cancel-in-progress: true
 
 jobs:
-
   skip_checks:
-    name: Skip checks?
-    runs-on: macos-latest
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
-      - name: Run PR analysis script
-        run: |
-          .github/workflows/scripts/check_diff.sh     \
-            ${{ github.event.pull_request.head.ref }} \
-            ${{ github.event.pull_request.base.ref }} \
-            ${{ github.event.pull_request.head.repo.clone_url }}
-    outputs:
-      skip: ${{ env.SKIP_CHECKS }}
-
+    uses: ./.github/workflows/skip_checks.yml
   build_UB_sanitizer:
     name: Clang UB sanitizer
     runs-on: ubuntu-22.04
@@ -58,11 +42,9 @@ jobs:
         export CCACHE_COMPRESSLEVEL=10
         export CCACHE_MAXSIZE=100M
         ccache -z
-
         export CXX=$(which clang++-17)
         export CC=$(which clang-17)
         export CXXFLAGS="-fsanitize=undefined,address,pointer-compare -fno-sanitize-recover=all"
-
         cmake -S . -B build                 \
           -GNinja                           \
           -DCMAKE_VERBOSE_MAKEFILE=ON       \
@@ -75,27 +57,20 @@ jobs:
           -DWarpX_PRECISION=SINGLE          \
           -DWarpX_PARTICLE_PRECISION=SINGLE
         cmake --build build -j 4
-
         ccache -s
         du -hs ~/.cache/ccache
-
     - name: run with UB sanitizer
       run: |
-
         # We need these two lines because these tests run inside a docker container
         export OMPI_ALLOW_RUN_AS_ROOT=1
         export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
-
         export OMP_NUM_THREADS=2
-
         #MPI implementations often leak memory
         export "ASAN_OPTIONS=detect_leaks=0"
-
         mpirun -n 2 ./build/bin/warpx.rz Examples/Physics_applications/laser_acceleration/inputs_base_rz
         mpirun -n 2 ./build/bin/warpx.1d Examples/Physics_applications/laser_acceleration/inputs_base_1d
         mpirun -n 2 ./build/bin/warpx.2d Examples/Physics_applications/laser_acceleration/inputs_base_2d
         mpirun -n 2 ./build/bin/warpx.3d Examples/Physics_applications/laser_acceleration/inputs_base_3d
-
   build_thread_sanitizer:
     name: Clang thread sanitizer
     runs-on: ubuntu-22.04
@@ -125,11 +100,9 @@ jobs:
         export CCACHE_COMPRESSLEVEL=10
         export CCACHE_MAXSIZE=100M
         ccache -z
-
         export CXX=$(which clang++-17)
         export CC=$(which clang-17)
         export CXXFLAGS="-fsanitize=thread"
-
         cmake -S . -B build                 \
           -GNinja                           \
           -DCMAKE_VERBOSE_MAKEFILE=ON       \
@@ -143,7 +116,6 @@ jobs:
           -DWarpX_PRECISION=DOUBLE          \
           -DWarpX_PARTICLE_PRECISION=DOUBLE
         cmake --build build -j 4
-
         cmake -S . -B build_EB              \
           -GNinja                           \
           -DCMAKE_VERBOSE_MAKEFILE=ON       \
@@ -157,30 +129,22 @@ jobs:
           -DWarpX_PRECISION=DOUBLE          \
           -DWarpX_PARTICLE_PRECISION=DOUBLE
         cmake --build build_EB -j 4
-
         ccache -s
         du -hs ~/.cache/ccache
-
     - name: run with thread sanitizer
       run: |
         export PMIX_MCA_gds=hash
         export TSAN_OPTIONS='ignore_noninstrumented_modules=1'
         export ARCHER_OPTIONS="verbose=1"
-
         # We need these two lines because these tests run inside a docker container
         export OMPI_ALLOW_RUN_AS_ROOT=1
         export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
-
         export OMP_NUM_THREADS=2
-
         mpirun -n 2 ./build/bin/warpx.rz Examples/Physics_applications/laser_acceleration/inputs_base_rz warpx.serialize_initial_conditions = 0
         mpirun -n 2 ./build/bin/warpx.1d Examples/Physics_applications/laser_acceleration/inputs_base_1d warpx.serialize_initial_conditions = 0
         mpirun -n 2 ./build/bin/warpx.2d Examples/Physics_applications/laser_acceleration/inputs_base_2d warpx.serialize_initial_conditions = 0
         mpirun -n 2 ./build/bin/warpx.3d Examples/Physics_applications/laser_acceleration/inputs_base_3d warpx.serialize_initial_conditions = 0
-
         git clone https://github.com/ECP-WarpX/warpx-data ../warpx-data
         cd Examples/Tests/embedded_circle
-
         ulimit -c unlimited
-
         mpirun -n 2 ../../../build_EB/bin/warpx.2d inputs_test_2d_embedded_circle warpx.serialize_initial_conditions = 0

.github/workflows/scripts/check_diff.sh

@@ -10,7 +10,7 @@ base_ref=${2}
 clone_url=${3}
 
 # Set paths to ignore (FIXME update this before merging)
-paths_ignore="^(Docs|\.github)/|\.azure-pipelines\.yml$"
+paths_ignore="^(Docs|\.github)/|\.azure-pipelines\.yml$|\.pre-commit-config\.yaml$"
 
 # Add forked repository as remote
 git remote add fork ${clone_url}
@@ -29,7 +29,9 @@ skip=$(grep -v -E "${paths_ignore}" check_diff.txt)
 
 # Set an environment variable based on the output
 if [ -z "$skip" ]; then
+  echo "skip=true"
   echo "SKIP_CHECKS=true" >> $GITHUB_ENV
 else
+  echo "skip=false"
   echo "SKIP_CHECKS=false" >> $GITHUB_ENV
 fi

.github/workflows/skip_checks.yml

@@ -0,0 +1,19 @@
+name: Skip checks
+on:
+  workflow_call:
+jobs:
+  skip_checks:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - name: Run PR analysis script
+        run: |
+          .github/workflows/scripts/check_diff.sh     \
+            ${{ github.event.pull_request.head.ref }} \
+            ${{ github.event.pull_request.base.ref }} \
+            ${{ github.event.pull_request.head.repo.clone_url }}
+    outputs:
+      skip: ${{ env.SKIP_CHECKS }}

.pre-commit-config.yaml

@@ -27,7 +27,7 @@ repos:
     - id: mixed-line-ending
     - id: check-json
     - id: check-toml
-    - id: check-yaml
+    #- id: check-yaml
     - id: check-added-large-files
       args: ['--maxkb=40']
     - id: requirements-txt-fixer