From ad6604fd0cf8bd6bd3ded84ec69d041e194332b5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 25 Nov 2023 14:57:28 +0100 Subject: [PATCH] remove easystack files used for pilot.eessi-hpc.org --- eessi-2021.06.yml | 53 ------------------------ eessi-2021.12.yml | 69 ------------------------------- eessi-2023.06-eb-4.7.2-2021a.yml | 26 ------------ eessi-2023.06-eb-4.7.2-2021b.yml | 17 -------- eessi-2023.06-eb-4.7.2-2022a.yml | 3 -- eessi-2023.06-eb-4.7.2-2022b.yml | 13 ------ eessi-2023.06-eb-4.7.2-system.yml | 7 ---- eessi-2023.06-eb-4.8.0-2021a.yml | 2 - eessi-2023.06-eb-4.8.0-2021b.yml | 12 ------ eessi-2023.06-eb-4.8.0-system.yml | 10 ----- eessi-2023.06-eb-4.8.1-2021a.yml | 7 ---- eessi-2023.06-eb-4.8.1-2021b.yml | 15 ------- eessi-2023.06-eb-4.8.1-2022a.yml | 12 ------ eessi-2023.06-eb-4.8.1-2023a.yml | 11 ----- eessi-2023.06-eb-4.8.1-system.yml | 9 ---- eessi-2023.06-eb-4.8.2-2021b.yml | 6 --- eessi-2023.06-eb-4.8.2-2022a.yml | 21 ---------- eessi-2023.06-known-issues.yml | 30 -------------- 18 files changed, 323 deletions(-) delete mode 100644 eessi-2021.06.yml delete mode 100644 eessi-2021.12.yml delete mode 100644 eessi-2023.06-eb-4.7.2-2021a.yml delete mode 100644 eessi-2023.06-eb-4.7.2-2021b.yml delete mode 100644 eessi-2023.06-eb-4.7.2-2022a.yml delete mode 100644 eessi-2023.06-eb-4.7.2-2022b.yml delete mode 100644 eessi-2023.06-eb-4.7.2-system.yml delete mode 100644 eessi-2023.06-eb-4.8.0-2021a.yml delete mode 100644 eessi-2023.06-eb-4.8.0-2021b.yml delete mode 100644 eessi-2023.06-eb-4.8.0-system.yml delete mode 100644 eessi-2023.06-eb-4.8.1-2021a.yml delete mode 100644 eessi-2023.06-eb-4.8.1-2021b.yml delete mode 100644 eessi-2023.06-eb-4.8.1-2022a.yml delete mode 100644 eessi-2023.06-eb-4.8.1-2023a.yml delete mode 100644 eessi-2023.06-eb-4.8.1-system.yml delete mode 100644 eessi-2023.06-eb-4.8.2-2021b.yml delete mode 100644 eessi-2023.06-eb-4.8.2-2022a.yml delete mode 100644 eessi-2023.06-known-issues.yml diff --git a/eessi-2021.06.yml b/eessi-2021.06.yml deleted file mode 100644 index 3587827746..0000000000 --- a/eessi-2021.06.yml +++ /dev/null @@ -1,53 +0,0 @@ -software: - R-bundle-Bioconductor: - toolchains: - foss-2020a: - versions: - '3.11': - versionsuffix: -R-4.0.0 - GROMACS: - toolchains: - foss-2020a: - versions: - '2020.1': - versionsuffix: -Python-3.8.2 - '2020.4': - versionsuffix: -Python-3.8.2 - Horovod: - toolchains: - foss-2020a: - versions: - '0.21.3': - versionsuffix: -TensorFlow-2.3.1-Python-3.8.2 - OpenFOAM: - toolchains: - foss-2020a: - versions: ['8', 'v2006'] - OSU-Micro-Benchmarks: - toolchains: - gompi-2020a: - versions: ['5.6.3'] - QuantumESPRESSO: - toolchains: - foss-2020a: - versions: ['6.6'] - TensorFlow: - toolchains: - foss-2020a: - versions: - '2.3.1': - versionsuffix: -Python-3.8.2 - RStudio-Server: - toolchains: - foss-2020a: - versions: - '1.3.1093': - versionsuffix: -Java-11-R-4.0.0 - ReFrame: - toolchains: - SYSTEM: - versions: '3.6.2' - code-server: - toolchains: - SYSTEM: - versions: '3.7.3' diff --git a/eessi-2021.12.yml b/eessi-2021.12.yml deleted file mode 100644 index 210bbb2845..0000000000 --- a/eessi-2021.12.yml +++ /dev/null @@ -1,69 +0,0 @@ -software: - code-server: - toolchains: - SYSTEM: - versions: '3.7.3' - GROMACS: - toolchains: - foss-2020a: - versions: - '2020.1': - versionsuffix: -Python-3.8.2 - '2020.4': - versionsuffix: -Python-3.8.2 - Horovod: - toolchains: - foss-2020a: - versions: - '0.21.3': - versionsuffix: -TensorFlow-2.3.1-Python-3.8.2 - Nextflow: - toolchains: - SYSTEM: - versions: '22.10.1' - OpenFOAM: - toolchains: - foss-2020a: - versions: ['8', 'v2006'] - OSU-Micro-Benchmarks: - toolchains: - gompi-2020a: - versions: ['5.6.3'] - gompi-2021a: - versions: ['5.7.1'] - QuantumESPRESSO: - toolchains: - foss-2020a: - versions: ['6.6'] - R: - toolchains: - foss-2021a: - versions: '4.1.0' - R-bundle-Bioconductor: - toolchains: - foss-2020a: - versions: - '3.11': - versionsuffix: -R-4.0.0 - RStudio-Server: - toolchains: - foss-2020a: - versions: - '1.3.1093': - versionsuffix: -Java-11-R-4.0.0 - SciPy-bundle: - toolchains: - foss-2021a: - versions: ['2021.05'] - TensorFlow: - toolchains: - foss-2020a: - versions: - '2.3.1': - versionsuffix: -Python-3.8.2 - WRF: - toolchains: - foss-2020a: - versions: - '3.9.1.1': - versionsuffix: -dmpar diff --git a/eessi-2023.06-eb-4.7.2-2021a.yml b/eessi-2023.06-eb-4.7.2-2021a.yml deleted file mode 100644 index 42a42f2236..0000000000 --- a/eessi-2023.06-eb-4.7.2-2021a.yml +++ /dev/null @@ -1,26 +0,0 @@ -easyconfigs: - - GCC-10.3.0 - - CMake-3.20.1-GCCcore-10.3.0.eb: - options: - include-easyblocks-from-pr: 2248 - - foss-2021a - - libpng-1.6.37-GCCcore-10.3.0.eb: - - libjpeg-turbo-2.0.6-GCCcore-10.3.0.eb - - git-2.32.0-GCCcore-10.3.0-nodocs.eb - - QuantumESPRESSO-6.7-foss-2021a.eb - - GROMACS-2021.3-foss-2021a.eb - - Qt5-5.15.2-GCCcore-10.3.0.eb: - # add missing patch files for Qt5 5.15.2 to fix build problems with glibc 2.34, - # see https://github.com/easybuilders/easybuild-easyconfigs/pull/18087 - options: - from-pr: 18087 - - RapidJSON-1.1.0-GCCcore-10.3.0.eb: - # strip out hardcoded -march=native, - # see https://github.com/easybuilders/easybuild-easyconfigs/pull/18725 - options: - from-pr: 18725 - - Arrow-6.0.0-foss-2021a.eb: - # fix installation of pyarrow Python bindings - # see https://github.com/easybuilders/easybuild-easyconfigs/pull/18348 - options: - from-pr: 18348 diff --git a/eessi-2023.06-eb-4.7.2-2021b.yml b/eessi-2023.06-eb-4.7.2-2021b.yml deleted file mode 100644 index 43a0fbd4bd..0000000000 --- a/eessi-2023.06-eb-4.7.2-2021b.yml +++ /dev/null @@ -1,17 +0,0 @@ -easyconfigs: - - GCC-11.2.0 - - CMake-3.21.1-GCCcore-11.2.0.eb: - options: - include-easyblocks-from-pr: 2248 - - CMake-3.22.1-GCCcore-11.2.0.eb: - options: - include-easyblocks-from-pr: 2248 - - zlib-1.2.11-GCCcore-11.2.0 - - OpenMPI-4.1.1-GCC-11.2.0 - - gompi-2021b - - FlexiBLAS-3.0.4-GCC-11.2.0.eb - - foss-2021b.eb - - git-2.33.1-GCCcore-11.2.0-nodocs.eb - - QuantumESPRESSO-6.8-foss-2021b.eb - - SciPy-bundle-2021.10-foss-2021b - - GROMACS-2021.5-foss-2021b.eb diff --git a/eessi-2023.06-eb-4.7.2-2022a.yml b/eessi-2023.06-eb-4.7.2-2022a.yml deleted file mode 100644 index d40ddff261..0000000000 --- a/eessi-2023.06-eb-4.7.2-2022a.yml +++ /dev/null @@ -1,3 +0,0 @@ -easyconfigs: - - GCC-11.3.0 - - OpenMPI-4.1.4-GCC-11.3.0.eb diff --git a/eessi-2023.06-eb-4.7.2-2022b.yml b/eessi-2023.06-eb-4.7.2-2022b.yml deleted file mode 100644 index b97be34dcf..0000000000 --- a/eessi-2023.06-eb-4.7.2-2022b.yml +++ /dev/null @@ -1,13 +0,0 @@ -easyconfigs: - - GCC-12.2.0 - - OpenMPI-4.1.4-GCC-12.2.0 - - CMake-3.24.3-GCCcore-12.2.0.eb: - options: - include-easyblocks-from-pr: 2248 - - foss-2022b - - netCDF-4.9.0-gompi-2022b.eb: - # use updated CMakeMake easyblock to avoid that -DCMAKE_SKIP_RPATH=ON is used, which breaks the netCDF test step - # see https://github.com/easybuilders/easybuild-easyblocks/pull/3012 - options: - include-easyblocks-from-pr: 3012 - - WRF-4.4.1-foss-2022b-dmpar.eb diff --git a/eessi-2023.06-eb-4.7.2-system.yml b/eessi-2023.06-eb-4.7.2-system.yml deleted file mode 100644 index 220fd82e87..0000000000 --- a/eessi-2023.06-eb-4.7.2-system.yml +++ /dev/null @@ -1,7 +0,0 @@ -easyconfigs: - - ReFrame-4.2.0.eb: - options: - from-pr: 18320 - - EasyBuild-4.8.0.eb: - options: - from-pr: 18282 diff --git a/eessi-2023.06-eb-4.8.0-2021a.yml b/eessi-2023.06-eb-4.8.0-2021a.yml deleted file mode 100644 index 1adf0572d3..0000000000 --- a/eessi-2023.06-eb-4.8.0-2021a.yml +++ /dev/null @@ -1,2 +0,0 @@ -easyconfigs: - - GDAL-3.3.0-foss-2021a.eb diff --git a/eessi-2023.06-eb-4.8.0-2021b.yml b/eessi-2023.06-eb-4.8.0-2021b.yml deleted file mode 100644 index a2562a4ed1..0000000000 --- a/eessi-2023.06-eb-4.8.0-2021b.yml +++ /dev/null @@ -1,12 +0,0 @@ -easyconfigs: - - MPFR-4.1.0-GCCcore-11.2.0.eb: - # use patch for MPFR 4.1.0 to fix failing tsprintf test with glibc >= 2.37, - # see https://github.com/easybuilders/easybuild-easyconfigs/pull/18746 - options: - from-pr: 18746 - - gnuplot-5.4.2-GCCcore-11.2.0.eb: - # make sure that Lua dependency is correctly picked up, - # see https://github.com/easybuilders/easybuild-easyconfigs/pull/19261 - options: - from-pr: 19261 - - OpenFOAM-v2112-foss-2021b.eb diff --git a/eessi-2023.06-eb-4.8.0-system.yml b/eessi-2023.06-eb-4.8.0-system.yml deleted file mode 100644 index 2928f110b0..0000000000 --- a/eessi-2023.06-eb-4.8.0-system.yml +++ /dev/null @@ -1,10 +0,0 @@ -easyconfigs: - - Java-11.eb: - # patch Java binaries/libraries when using alternate sysroot to ensure correct glibc & co are picked up - # see https://github.com/easybuilders/easybuild-easyblocks/pull/2557 - # + https://github.com/easybuilders/easybuild-easyblocks/pull/2995 - options: - include-easyblocks-from-pr: 2995 - - EasyBuild-4.8.1.eb: - options: - from-pr: 18761 diff --git a/eessi-2023.06-eb-4.8.1-2021a.yml b/eessi-2023.06-eb-4.8.1-2021a.yml deleted file mode 100644 index 999eb09925..0000000000 --- a/eessi-2023.06-eb-4.8.1-2021a.yml +++ /dev/null @@ -1,7 +0,0 @@ -easyconfigs: - - Xvfb-1.20.11-GCCcore-10.3.0.eb: - # fix permission issues for xvfb-run script, - # see https://github.com/easybuilders/easybuild-easyconfigs/pull/18834 - options: - from-pr: 18834 - - R-4.1.0-foss-2021a.eb diff --git a/eessi-2023.06-eb-4.8.1-2021b.yml b/eessi-2023.06-eb-4.8.1-2021b.yml deleted file mode 100644 index 6ee44926ba..0000000000 --- a/eessi-2023.06-eb-4.8.1-2021b.yml +++ /dev/null @@ -1,15 +0,0 @@ -easyconfigs: - - Xvfb-1.20.13-GCCcore-11.2.0.eb: - # enable exec permissions for xvfb-run after copying; - # need to also enable user write permissions on xvfb-run to ensure that copying with preserved permissions works - options: - from-pr: 18834 - - R-4.2.0-foss-2021b.eb - - PLUMED-2.7.3-foss-2021b.eb: - # the --enable-asmjit is not supported on Aarch64 - options: - from-pr: 19110 - - LAMMPS-23Jun2022-foss-2021b-kokkos.eb: - # TBB and ScaFaCos are optional dependencies when building on Intel arch - options: - from-pr: 19246 diff --git a/eessi-2023.06-eb-4.8.1-2022a.yml b/eessi-2023.06-eb-4.8.1-2022a.yml deleted file mode 100644 index 8317a40b7a..0000000000 --- a/eessi-2023.06-eb-4.8.1-2022a.yml +++ /dev/null @@ -1,12 +0,0 @@ -easyconfigs: - - OpenBLAS-0.3.20-GCC-11.3.0: - # use easyconfig that includes patch to fix detection of Neoverse V1 CPUs, - # see https://github.com/easybuilders/easybuild-easyconfigs/pull/18870 - options: - from-pr: 18870 - - foss-2022a - - SciPy-bundle-2022.05-foss-2022a - - BAMM-2.5.0-foss-2022a.eb - - ESPResSo-4.2.1-foss-2022a: - options: - from-pr: 18963 diff --git a/eessi-2023.06-eb-4.8.1-2023a.yml b/eessi-2023.06-eb-4.8.1-2023a.yml deleted file mode 100644 index c766815934..0000000000 --- a/eessi-2023.06-eb-4.8.1-2023a.yml +++ /dev/null @@ -1,11 +0,0 @@ -easyconfigs: - - GCC-12.3.0 - - OpenBLAS-0.3.23-GCC-12.3.0: - # add patch to disable flaky DDRGES3 LAPACK test, - # see https://github.com/easybuilders/easybuild-easyconfigs/pull/18887; - # also pulls in patch to avoid hang when running OpenBLAS test suite, - # see https://github.com/easybuilders/easybuild-easyconfigs/pull/18790 - options: - from-pr: 18887 - - foss-2023a - - X11-20230603-GCCcore-12.3.0 diff --git a/eessi-2023.06-eb-4.8.1-system.yml b/eessi-2023.06-eb-4.8.1-system.yml deleted file mode 100644 index b0731d2534..0000000000 --- a/eessi-2023.06-eb-4.8.1-system.yml +++ /dev/null @@ -1,9 +0,0 @@ -easyconfigs: - # rebuilt with EasyBuild v4.8.1 (now wraps around Java/11.0.20) - - Java-11.eb - - ReFrame-4.3.3.eb: - options: - from-pr: 18851 - - EasyBuild-4.8.2.eb: - options: - from-pr: 19105 diff --git a/eessi-2023.06-eb-4.8.2-2021b.yml b/eessi-2023.06-eb-4.8.2-2021b.yml deleted file mode 100644 index 00c02adf91..0000000000 --- a/eessi-2023.06-eb-4.8.2-2021b.yml +++ /dev/null @@ -1,6 +0,0 @@ -easyconfigs: - - Pillow-8.3.2-GCCcore-11.2.0.eb: - # avoid that hardcoded paths like /usr/include are used in build commands - options: - from-pr: 19226 - - matplotlib-3.4.3-foss-2021b.eb diff --git a/eessi-2023.06-eb-4.8.2-2022a.yml b/eessi-2023.06-eb-4.8.2-2022a.yml deleted file mode 100644 index ccd3fcd65d..0000000000 --- a/eessi-2023.06-eb-4.8.2-2022a.yml +++ /dev/null @@ -1,21 +0,0 @@ -easyconfigs: - - casacore-3.5.0-foss-2022a: - options: - from-pr: 19119 - - AOFlagger-3.4.0-foss-2022a: - options: - from-pr: 19119 - - EveryBeam-0.5.2-foss-2022a: - options: - from-pr: 19119 - - DP3-6.0-foss-2022a: - options: - from-pr: 19119 - - WSClean-3.4-foss-2022a: - options: - from-pr: 19119 - - Pillow-9.1.1-GCCcore-11.3.0.eb: - # avoid that hardcoded paths like /usr/include are used in build commands - options: - from-pr: 19226 - - matplotlib-3.5.2-foss-2022a.eb diff --git a/eessi-2023.06-known-issues.yml b/eessi-2023.06-known-issues.yml deleted file mode 100644 index ade1c069df..0000000000 --- a/eessi-2023.06-known-issues.yml +++ /dev/null @@ -1,30 +0,0 @@ -- x86_64/*: - - ESPResSo-4.2.1-foss-2022a: - - issue: https://github.com/EESSI/software-layer/issues/363 - - info: "Failing tests in ESPResSo v4.2.1 due to timeouts" -- aarch64/*: - - ESPResSo-4.2.1-foss-2022a: - - issue: https://github.com/EESSI/software-layer/issues/363 - - info: "Failing tests in ESPResSo v4.2.1 due to timeouts" -- aarch64/neoverse_v1: - - FFTW-3.3.10-GCC-11.3.0: - - issue: https://github.com/EESSI/software-layer/issues/325 - - info: "Flaky FFTW tests, random failures" - - FFTW-3.3.10-gompi-2021b: - - issue: https://github.com/EESSI/software-layer/issues/325 - - info: "Flaky FFTW tests, random failures" - - OpenBLAS-0.3.18-GCC-11.2.0: - - issue: https://github.com/EESSI/software-layer/issues/314 - - info: "Increased number of numerical errors in OpenBLAS test suite (238 vs max. 150 on x86_64/*)" - - OpenBLAS-0.3.20-GCC-11.3.0: - - issue: https://github.com/EESSI/software-layer/issues/314 - - info: "Increased number of numerical errors in OpenBLAS test suite (238 vs max. 150 on x86_64/*)" - - OpenBLAS-0.3.21-GCC-12.2.0: - - issue: https://github.com/EESSI/software-layer/issues/314 - - info: "Increased number of numerical errors in OpenBLAS test suite (344 vs max. 150 on x86_64/*)" - - SciPy-bundle-2021.05-foss-2021a: - - issue: https://github.com/EESSI/software-layer/issues/318 - - info: "2 failing tests (vs 30554 passed) in scipy test suite" - - SciPy-bundle-2021.10-foss-2021b: - - issue: https://github.com/EESSI/software-layer/issues/318 - - info: "20 failing tests (vs 14429 passed) in numpy test suite + 55 failing tests (vs 32438 passed) in scipy test suite"