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To Do #1

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1 of 3 tasks
jamiemcg opened this issue Jul 15, 2022 · 0 comments
Open
1 of 3 tasks

To Do #1

jamiemcg opened this issue Jul 15, 2022 · 0 comments

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@jamiemcg
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jamiemcg commented Jul 15, 2022

  • move scripts (map_taxids.py, parse_kreport.py, print_best_blast_hits.py) to somewhere where snakemake can see them (currently expects them to be in $PATH)
  • move slurm-%j.out files into a directory slurm_logs
  • for the rRNA summary file, report (min, mean, max) for both alignment length and identity
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